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The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. Krallinger M, et al. Among authors: shatkay h. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2105-12-S8-S3. BMC Bioinformatics. 2011. PMID: 22151929 Free PMC article.
Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.
Verspoor K, Shatkay H, Hirschman L, Blaschke C, Valencia A. Verspoor K, et al. Among authors: shatkay h. Bioinformatics. 2015 Jan 15;31(2):297-8. doi: 10.1093/bioinformatics/btu412. Epub 2014 Jul 14. Bioinformatics. 2015. PMID: 25024289
How to get the most out of your curation effort.
Rzhetsky A, Shatkay H, Wilbur WJ. Rzhetsky A, et al. Among authors: shatkay h. PLoS Comput Biol. 2009 May;5(5):e1000391. doi: 10.1371/journal.pcbi.1000391. Epub 2009 May 22. PLoS Comput Biol. 2009. PMID: 19461884 Free PMC article.
Translational drug-interaction corpus.
Zhang S, Wu H, Wang L, Zhang G, Rocha LM, Shatkay H, Li L. Zhang S, et al. Among authors: shatkay h. Database (Oxford). 2022 May 18;2022:baac031. doi: 10.1093/database/baac031. Database (Oxford). 2022. PMID: 35616099 Free PMC article.
Text mining for biology--the way forward: opinions from leading scientists.
Altman RB, Bergman CM, Blake J, Blaschke C, Cohen A, Gannon F, Grivell L, Hahn U, Hersh W, Hirschman L, Jensen LJ, Krallinger M, Mons B, O'Donoghue SI, Peitsch MC, Rebholz-Schuhmann D, Shatkay H, Valencia A. Altman RB, et al. Among authors: shatkay h. Genome Biol. 2008;9 Suppl 2(Suppl 2):S7. doi: 10.1186/gb-2008-9-s2-s7. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834498 Free PMC article.
55 results