Pique-Regi R - Search Results

1

DNase I sensitivity QTLs are a major determinant of human expression variation.

Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, De Leon S, Michelini K, Lewellen N, Crawford GE, Stephens M, Gilad Y, Pritchard JK. Degner JF, et al. Nature. 2012 Feb 5;482(7385):390-4. doi: 10.1038/nature10808. Nature. 2012. PMID: 22307276 Free PMC article.

2

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data.

Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK. Pique-Regi R, et al. Genome Res. 2011 Mar;21(3):447-55. doi: 10.1101/gr.112623.110. Epub 2010 Nov 24. Genome Res. 2011. PMID: 21106904 Free PMC article.

3

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.

Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK. Bell JT, et al. Genome Biol. 2011;12(1):R10. doi: 10.1186/gb-2011-12-1-r10. Epub 2011 Jan 20. Genome Biol. 2011. PMID: 21251332 Free PMC article.

4

Dissecting the regulatory architecture of gene expression QTLs.

Gaffney DJ, Veyrieras JB, Degner JF, Pique-Regi R, Pai AA, Crawford GE, Stephens M, Gilad Y, Pritchard JK. Gaffney DJ, et al. Genome Biol. 2012 Jan 31;13(1):R7. doi: 10.1186/gb-2012-13-1-r7. Genome Biol. 2012. PMID: 22293038 Free PMC article.

5

DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina.

Zullo JM, Demarco IA, Piqué-Regi R, Gaffney DJ, Epstein CB, Spooner CJ, Luperchio TR, Bernstein BE, Pritchard JK, Reddy KL, Singh H. Zullo JM, et al. Cell. 2012 Jun 22;149(7):1474-87. doi: 10.1016/j.cell.2012.04.035. Cell. 2012. PMID: 22726435 Free article.

6

Bacterial infection remodels the DNA methylation landscape of human dendritic cells.

Pacis A, Tailleux L, Morin AM, Lambourne J, MacIsaac JL, Yotova V, Dumaine A, Danckaert A, Luca F, Grenier JC, Hansen KD, Gicquel B, Yu M, Pai A, He C, Tung J, Pastinen T, Kobor MS, Pique-Regi R, Gilad Y, Barreiro LB. Pacis A, et al. Genome Res. 2015 Dec;25(12):1801-11. doi: 10.1101/gr.192005.115. Epub 2015 Sep 21. Genome Res. 2015. PMID: 26392366 Free PMC article.

7

Environmental perturbations lead to extensive directional shifts in RNA processing.

Richards AL, Watza D, Findley A, Alazizi A, Wen X, Pai AA, Pique-Regi R, Luca F. Richards AL, et al. PLoS Genet. 2017 Oct 12;13(10):e1006995. doi: 10.1371/journal.pgen.1006995. eCollection 2017 Oct. PLoS Genet. 2017. PMID: 29023442 Free PMC article.

8

Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions.

Findley AS, Monziani A, Richards AL, Rhodes K, Ward MC, Kalita CA, Alazizi A, Pazokitoroudi A, Sankararaman S, Wen X, Lanfear DE, Pique-Regi R, Gilad Y, Luca F. Findley AS, et al. Elife. 2021 May 14;10:e67077. doi: 10.7554/eLife.67077. Elife. 2021. PMID: 33988505 Free PMC article.

9

A signature of Neanderthal introgression on molecular mechanisms of environmental responses.

Findley AS, Zhang X, Boye C, Lin YL, Kalita CA, Barreiro L, Lohmueller KE, Pique-Regi R, Luca F. Findley AS, et al. PLoS Genet. 2021 Sep 27;17(9):e1009493. doi: 10.1371/journal.pgen.1009493. eCollection 2021 Sep. PLoS Genet. 2021. PMID: 34570765 Free PMC article.

10

Dissecting human population variation in single-cell responses to SARS-CoV-2.

Aquino Y, Bisiaux A, Li Z, O'Neill M, Mendoza-Revilla J, Merkling SH, Kerner G, Hasan M, Libri V, Bondet V, Smith N, de Cevins C, Ménager M, Luca F, Pique-Regi R, Barba-Spaeth G, Pietropaoli S, Schwartz O, Leroux-Roels G, Lee CK, Leung K, Wu JT, Peiris M, Bruzzone R, Abel L, Casanova JL, Valkenburg SA, Duffy D, Patin E, Rotival M, Quintana-Murci L. Aquino Y, et al. Among authors: pique regi r. Nature. 2023 Sep;621(7977):120-128. doi: 10.1038/s41586-023-06422-9. Epub 2023 Aug 9. Nature. 2023. PMID: 37558883 Free PMC article.

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