MacLean D - Search Results

1

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.

Bonnal RJ, Aerts J, Githinji G, Goto N, MacLean D, Miller CA, Mishima H, Pagani M, Ramirez-Gonzalez R, Smant G, Strozzi F, Syme R, Vos R, Wennblom TJ, Woodcroft BJ, Katayama T, Prins P. Bonnal RJ, et al. Among authors: maclean d. Bioinformatics. 2012 Apr 1;28(7):1035-7. doi: 10.1093/bioinformatics/bts080. Epub 2012 Feb 12. Bioinformatics. 2012. PMID: 22332238 Free PMC article.

2

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby.

Etherington GJ, Ramirez-Gonzalez RH, MacLean D. Etherington GJ, et al. Among authors: maclean d. Bioinformatics. 2015 Aug 1;31(15):2565-7. doi: 10.1093/bioinformatics/btv178. Epub 2015 Mar 29. Bioinformatics. 2015. PMID: 25819670

3

Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data.

Ramirez-Gonzalez R, Caccamo M, MacLean D. Ramirez-Gonzalez R, et al. Among authors: maclean d. Bioinformatics. 2011 Oct 1;27(19):2754-5. doi: 10.1093/bioinformatics/btr442. Epub 2011 Jul 29. Bioinformatics. 2011. PMID: 21803806

4

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, Via A, Watson M, Schneider MV, Attwood TK. Corpas M, et al. Among authors: maclean d. Bioinformatics. 2015 Jan 1;31(1):140-2. doi: 10.1093/bioinformatics/btu601. Epub 2014 Sep 4. Bioinformatics. 2015. PMID: 25189782 Free PMC article.

5

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments.

Ramirez-Gonzalez RH, Bonnal R, Caccamo M, Maclean D. Ramirez-Gonzalez RH, et al. Among authors: maclean d. Source Code Biol Med. 2012 May 28;7(1):6. doi: 10.1186/1751-0473-7-6. Source Code Biol Med. 2012. PMID: 22640879 Free PMC article.

6

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.

Leggett RM, Ramirez-Gonzalez RH, Verweij W, Kawashima CG, Iqbal Z, Jones JD, Caccamo M, Maclean D. Leggett RM, et al. Among authors: maclean d. PLoS One. 2013;8(3):e60058. doi: 10.1371/journal.pone.0060058. Epub 2013 Mar 25. PLoS One. 2013. PMID: 23536903 Free PMC article.

7

SVGenes: a library for rendering genomic features in scalable vector graphic format.

Etherington GJ, MacLean D. Etherington GJ, et al. Among authors: maclean d. Bioinformatics. 2013 Aug 1;29(15):1890-2. doi: 10.1093/bioinformatics/btt294. Epub 2013 Jun 6. Bioinformatics. 2013. PMID: 23749959 Free PMC article.

8

A toolkit for analysing large-scale plant small RNA datasets.

Moxon S, Schwach F, Dalmay T, Maclean D, Studholme DJ, Moulton V. Moxon S, et al. Among authors: maclean d. Bioinformatics. 2008 Oct 1;24(19):2252-3. doi: 10.1093/bioinformatics/btn428. Epub 2008 Aug 19. Bioinformatics. 2008. PMID: 18713789

9

Finding sRNA generative locales from high-throughput sequencing data with NiBLS.

MacLean D, Moulton V, Studholme DJ. MacLean D, et al. BMC Bioinformatics. 2010 Feb 18;11:93. doi: 10.1186/1471-2105-11-93. BMC Bioinformatics. 2010. PMID: 20167070 Free PMC article.

10

Using 2k + 2 bubble searches to find single nucleotide polymorphisms in k-mer graphs.

Younsi R, MacLean D. Younsi R, et al. Among authors: maclean d. Bioinformatics. 2015 Mar 1;31(5):642-6. doi: 10.1093/bioinformatics/btu706. Epub 2014 Oct 24. Bioinformatics. 2015. PMID: 25344498 Free PMC article.

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