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BIO::Phylo-phyloinformatic analysis using perl.
Vos RA, Caravas J, Hartmann K, Jensen MA, Miller C. Vos RA, et al. BMC Bioinformatics. 2011 Feb 27;12:63. doi: 10.1186/1471-2105-12-63. BMC Bioinformatics. 2011. PMID: 21352572 Free PMC article.
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.
Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, Mirarab S, Rosenberg MS, Balhoff JP, Bik HM, Heath TA, Midford PE, Brown JW, McTavish EJ, Sukumaran J, Westneat M, Alfaro ME, Steele A, Jordan G. Stoltzfus A, et al. BMC Bioinformatics. 2013 May 13;14:158. doi: 10.1186/1471-2105-14-158. BMC Bioinformatics. 2013. PMID: 23668630 Free PMC article.
Emerging semantics to link phenotype and environment.
Thessen AE, Bunker DE, Buttigieg PL, Cooper LD, Dahdul WM, Domisch S, Franz NM, Jaiswal P, Lawrence-Dill CJ, Midford PE, Mungall CJ, Ramírez MJ, Specht CD, Vogt L, Vos RA, Walls RL, White JW, Zhang G, Deans AR, Huala E, Lewis SE, Mabee PM. Thessen AE, et al. Among authors: vos ra. PeerJ. 2015 Dec 14;3:e1470. doi: 10.7717/peerj.1470. eCollection 2015. PeerJ. 2015. PMID: 26713234 Free PMC article.
Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera.
Mutanen M, Kivelä SM, Vos RA, Doorenweerd C, Ratnasingham S, Hausmann A, Huemer P, Dincă V, van Nieukerken EJ, Lopez-Vaamonde C, Vila R, Aarvik L, Decaëns T, Efetov KA, Hebert PD, Johnsen A, Karsholt O, Pentinsaari M, Rougerie R, Segerer A, Tarmann G, Zahiri R, Godfray HC. Mutanen M, et al. Among authors: vos ra. Syst Biol. 2016 Nov;65(6):1024-1040. doi: 10.1093/sysbio/syw044. Epub 2016 Jun 10. Syst Biol. 2016. PMID: 27288478 Free PMC article.
BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.
Hardisty AR, Bacall F, Beard N, Balcázar-Vargas MP, Balech B, Barcza Z, Bourlat SJ, De Giovanni R, de Jong Y, De Leo F, Dobor L, Donvito G, Fellows D, Guerra AF, Ferreira N, Fetyukova Y, Fosso B, Giddy J, Goble C, Güntsch A, Haines R, Ernst VH, Hettling H, Hidy D, Horváth F, Ittzés D, Ittzés P, Jones A, Kottmann R, Kulawik R, Leidenberger S, Lyytikäinen-Saarenmaa P, Mathew C, Morrison N, Nenadic A, de la Hidalga AN, Obst M, Oostermeijer G, Paymal E, Pesole G, Pinto S, Poigné A, Fernandez FQ, Santamaria M, Saarenmaa H, Sipos G, Sylla KH, Tähtinen M, Vicario S, Vos RA, Williams AR, Yilmaz P. Hardisty AR, et al. Among authors: vos ra. BMC Ecol. 2016 Oct 20;16(1):49. doi: 10.1186/s12898-016-0103-y. BMC Ecol. 2016. PMID: 27765035 Free PMC article.
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.
Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun HW, Aerts J, Aranda B, Barboza LH, Bonnal RJ, Bruskiewich R, Bryne JC, Fernández JM, Funahashi A, Gordon PM, Goto N, Groscurth A, Gutteridge A, Holland R, Kano Y, Kawas EA, Kerhornou A, Kibukawa E, Kinjo AR, Kuhn M, Lapp H, Lehvaslaiho H, Nakamura H, Nakamura Y, Nishizawa T, Nobata C, Noguchi T, Oinn TM, Okamoto S, Owen S, Pafilis E, Pocock M, Prins P, Ranzinger R, Reisinger F, Salwinski L, Schreiber M, Senger M, Shigemoto Y, Standley DM, Sugawara H, Tashiro T, Trelles O, Vos RA, Wilkinson MD, York W, Zmasek CM, Asai K, Takagi T. Katayama T, et al. Among authors: vos ra. J Biomed Semantics. 2010 Aug 21;1(1):8. doi: 10.1186/2041-1480-1-8. J Biomed Semantics. 2010. PMID: 20727200 Free PMC article.
Symbiont switching and trophic mode shifts in Orchidaceae.
Wang D, Jacquemyn H, Gomes SIF, Vos RA, Merckx VSFT. Wang D, et al. Among authors: vos ra. New Phytol. 2021 Jul;231(2):791-800. doi: 10.1111/nph.17414. Epub 2021 Jun 1. New Phytol. 2021. PMID: 33932029 Free PMC article.
148 results