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Cell-type specificity of ChIP-predicted transcription factor binding sites.
BMC Genomics. 2012 Aug 3;13:372. doi: 10.1186/1471-2164-13-372.
BMC Genomics. 2012.
PMID: 22863112
Free PMC article.
A ChIP-Seq benchmark shows that sequence conservation mainly improves detection of strong transcription factor binding sites.
Håndstad T, Rye MB, Drabløs F, Sætrom P.
Håndstad T, et al.
PLoS One. 2011 Apr 14;6(4):e18430. doi: 10.1371/journal.pone.0018430.
PLoS One. 2011.
PMID: 21533218
Free PMC article.
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Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.
Rye M, Sætrom P, Håndstad T, Drabløs F.
Rye M, et al. Among authors: handstad t.
BMC Biol. 2011 Nov 24;9:80. doi: 10.1186/1741-7007-9-80.
BMC Biol. 2011.
PMID: 22115494
Free PMC article.
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The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding.
Kornacker K, Rye MB, Håndstad T, Drabløs F.
Kornacker K, et al. Among authors: handstad t.
BMC Bioinformatics. 2012 Jul 24;13:176. doi: 10.1186/1471-2105-13-176.
BMC Bioinformatics. 2012.
PMID: 22827163
Free PMC article.
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Motif kernel generated by genetic programming improves remote homology and fold detection.
Håndstad T, Hestnes AJ, Saetrom P.
Håndstad T, et al.
BMC Bioinformatics. 2007 Jan 25;8:23. doi: 10.1186/1471-2105-8-23.
BMC Bioinformatics. 2007.
PMID: 17254344
Free PMC article.
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