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Page 1
An encyclopedia of mouse DNA elements (Mouse ENCODE).
Mouse ENCODE Consortium; Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, Roach V, Sabo PJ, Sandstrom R, Stehling AS, Thurman RE, Weissman SM, Cayting P, Hariharan M, Lian J, Cheng Y, Landt SG, Ma Z, Wold BJ, Dekker J, Crawford GE, Keller CA, Wu W, Morrissey C, Kumar SA, Mishra T, Jain D, Byrska-Bishop M, Blankenberg D, Lajoie BR, Jain G, Sanyal A, Chen KB, Denas O, Taylor J, Blobel GA, Weiss MJ, Pimkin M, Deng W, Marinov GK, Williams BA, Fisher-Aylor KI, Desalvo G, Kiralusha A, Trout D, Amrhein H, Mortazavi A, Edsall L, McCleary D, Kuan S, Shen Y, Yue F, Ye Z, Davis CA, Zaleski C, Jha S, Xue C, Dobin A, Lin W, Fastuca M, Wang H, Guigo R, Djebali S, Lagarde J, Ryba T, Sasaki T, Malladi VS, Cline MS, Kirkup VM, Learned K, Rosenbloom KR, Kent WJ, Feingold EA, Good PJ, Pazin M, Lowdon RF, Adams LB. Mouse ENCODE Consortium, et al. Among authors: blankenberg d. Genome Biol. 2012 Aug 13;13(8):418. doi: 10.1186/gb-2012-13-8-418. Genome Biol. 2012. PMID: 22889292 Free PMC article.
Galaxy: a platform for interactive large-scale genome analysis.
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A. Giardine B, et al. Among authors: blankenberg d. Genome Res. 2005 Oct;15(10):1451-5. doi: 10.1101/gr.4086505. Epub 2005 Sep 16. Genome Res. 2005. PMID: 16169926 Free PMC article.
28-way vertebrate alignment and conservation track in the UCSC Genome Browser.
Miller W, Rosenbloom K, Hardison RC, Hou M, Taylor J, Raney B, Burhans R, King DC, Baertsch R, Blankenberg D, Kosakovsky Pond SL, Nekrutenko A, Giardine B, Harris RS, Tyekucheva S, Diekhans M, Pringle TH, Murphy WJ, Lesk A, Weinstock GM, Lindblad-Toh K, Gibbs RA, Lander ES, Siepel A, Haussler D, Kent WJ. Miller W, et al. Among authors: blankenberg d. Genome Res. 2007 Dec;17(12):1797-808. doi: 10.1101/gr.6761107. Epub 2007 Nov 5. Genome Res. 2007. PMID: 17984227 Free PMC article.
Dissemination of scientific software with Galaxy ToolShed.
Blankenberg D, Von Kuster G, Bouvier E, Baker D, Afgan E, Stoler N; Galaxy Team; Taylor J, Nekrutenko A. Blankenberg D, et al. Genome Biol. 2014 Feb 20;15(2):403. doi: 10.1186/gb4161. Genome Biol. 2014. PMID: 25001293 Free PMC article.
Using Galaxy to perform large-scale interactive data analyses.
Hillman-Jackson J, Clements D, Blankenberg D, Taylor J, Nekrutenko A, Team G. Hillman-Jackson J, et al. Among authors: blankenberg d. Curr Protoc Bioinformatics. 2012 Jun;Chapter 10:10.5.1-10.5.47. doi: 10.1002/0471250953.bi1005s38. Curr Protoc Bioinformatics. 2012. PMID: 22700312 Free PMC article.
Galaxy: a web-based genome analysis tool for experimentalists.
Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M, Nekrutenko A, Taylor J. Blankenberg D, et al. Curr Protoc Mol Biol. 2010 Jan;Chapter 19:Unit 19.10.1-21. doi: 10.1002/0471142727.mb1910s89. Curr Protoc Mol Biol. 2010. PMID: 20069535 Free PMC article.
55 results