Underwood JG - Search Results

1

Improving PacBio long read accuracy by short read alignment.

Au KF, Underwood JG, Lee L, Wong WH. Au KF, et al. Among authors: underwood jg. PLoS One. 2012;7(10):e46679. doi: 10.1371/journal.pone.0046679. Epub 2012 Oct 4. PLoS One. 2012. PMID: 23056399 Free PMC article.

2

Characterization of the human ESC transcriptome by hybrid sequencing.

Au KF, Sebastiano V, Afshar PT, Durruthy JD, Lee L, Williams BA, van Bakel H, Schadt EE, Reijo-Pera RA, Underwood JG, Wong WH. Au KF, et al. Among authors: underwood jg. Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):E4821-30. doi: 10.1073/pnas.1320101110. Epub 2013 Nov 26. Proc Natl Acad Sci U S A. 2013. PMID: 24282307 Free PMC article.

3

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.

Weirather JL, Afshar PT, Clark TA, Tseng E, Powers LS, Underwood JG, Zabner J, Korlach J, Wong WH, Au KF. Weirather JL, et al. Among authors: underwood jg. Nucleic Acids Res. 2015 Oct 15;43(18):e116. doi: 10.1093/nar/gkv562. Epub 2015 Jun 3. Nucleic Acids Res. 2015. PMID: 26040699 Free PMC article.

4

Long-read sequencing of chicken transcripts and identification of new transcript isoforms.

Thomas S, Underwood JG, Tseng E, Holloway AK; Bench To Basinet CvDC Informatics Subcommittee. Thomas S, et al. Among authors: underwood jg. PLoS One. 2014 Apr 15;9(4):e94650. doi: 10.1371/journal.pone.0094650. eCollection 2014. PLoS One. 2014. PMID: 24736250 Free PMC article.

5

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.

Gordon SP, Tseng E, Salamov A, Zhang J, Meng X, Zhao Z, Kang D, Underwood J, Grigoriev IV, Figueroa M, Schilling JS, Chen F, Wang Z. Gordon SP, et al. PLoS One. 2015 Jul 15;10(7):e0132628. doi: 10.1371/journal.pone.0132628. eCollection 2015. PLoS One. 2015. PMID: 26177194 Free PMC article.

6

Gene isoform specificity through enhancer-associated antisense transcription.

Onodera CS, Underwood JG, Katzman S, Jacobs F, Greenberg D, Salama SR, Haussler D. Onodera CS, et al. Among authors: underwood jg. PLoS One. 2012;7(8):e43511. doi: 10.1371/journal.pone.0043511. Epub 2012 Aug 24. PLoS One. 2012. PMID: 22937057 Free PMC article.

7

In vitro RNA splicing in mammalian cell extracts.

Rooke N, Underwood J. Rooke N, et al. Curr Protoc Cell Biol. 2001 May;Chapter 11:Unit 11.17. doi: 10.1002/0471143030.cb1117s18. Curr Protoc Cell Biol. 2001. PMID: 18228306

8

Transcriptional fates of human-specific segmental duplications in brain.

Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE. Dougherty ML, et al. Among authors: underwood jg. Genome Res. 2018 Oct;28(10):1566-1576. doi: 10.1101/gr.237610.118. Epub 2018 Sep 18. Genome Res. 2018. PMID: 30228200 Free PMC article.

9

Long-read isoform sequencing reveals tissue-specific isoform expression between active and hibernating brown bears (Ursus arctos).

Tseng E, Underwood JG, Evans Hutzenbiler BD, Trojahn S, Kingham B, Shevchenko O, Bernberg E, Vierra M, Robbins CT, Jansen HT, Kelley JL. Tseng E, et al. Among authors: underwood jg. G3 (Bethesda). 2022 Mar 4;12(3):jkab422. doi: 10.1093/g3journal/jkab422. G3 (Bethesda). 2022. PMID: 35100340 Free PMC article.

10

ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms.

Sheynkman GM, Tuttle KS, Laval F, Tseng E, Underwood JG, Yu L, Dong D, Smith ML, Sebra R, Willems L, Hao T, Calderwood MA, Hill DE, Vidal M. Sheynkman GM, et al. Among authors: underwood jg. Nat Commun. 2020 May 11;11(1):2326. doi: 10.1038/s41467-020-16174-z. Nat Commun. 2020. PMID: 32393825 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

70 results

Search Page