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Computing life: Add logos to biology and bios to physics.
Kolodkin A, Simeonidis E, Westerhoff HV. Kolodkin A, et al. Among authors: westerhoff hv. Prog Biophys Mol Biol. 2013 Apr;111(2-3):69-74. doi: 10.1016/j.pbiomolbio.2012.10.003. Epub 2012 Oct 24. Prog Biophys Mol Biol. 2013. PMID: 23103359
Systems biology towards life in silico: mathematics of the control of living cells.
Westerhoff HV, Kolodkin A, Conradie R, Wilkinson SJ, Bruggeman FJ, Krab K, van Schuppen JH, Hardin H, Bakker BM, Moné MJ, Rybakova KN, Eijken M, van Leeuwen HJ, Snoep JL. Westerhoff HV, et al. J Math Biol. 2009 Jan;58(1-2):7-34. doi: 10.1007/s00285-008-0160-8. Epub 2008 Feb 16. J Math Biol. 2009. PMID: 18278498
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.
Herrgård MJ, Swainston N, Dobson P, Dunn WB, Arga KY, Arvas M, Blüthgen N, Borger S, Costenoble R, Heinemann M, Hucka M, Le Novère N, Li P, Liebermeister W, Mo ML, Oliveira AP, Petranovic D, Pettifer S, Simeonidis E, Smallbone K, Spasić I, Weichart D, Brent R, Broomhead DS, Westerhoff HV, Kirdar B, Penttilä M, Klipp E, Palsson BØ, Sauer U, Oliver SG, Mendes P, Nielsen J, Kell DB. Herrgård MJ, et al. Among authors: westerhoff hv. Nat Biotechnol. 2008 Oct;26(10):1155-60. doi: 10.1038/nbt1492. Nat Biotechnol. 2008. PMID: 18846089 Free PMC article.
Systems biology: the elements and principles of life.
Westerhoff HV, Winder C, Messiha H, Simeonidis E, Adamczyk M, Verma M, Bruggeman FJ, Dunn W. Westerhoff HV, et al. FEBS Lett. 2009 Dec 17;583(24):3882-90. doi: 10.1016/j.febslet.2009.11.018. FEBS Lett. 2009. PMID: 19913018 Free article. Review.
Why does yeast ferment? A flux balance analysis study.
Simeonidis E, Murabito E, Smallbone K, Westerhoff HV. Simeonidis E, et al. Among authors: westerhoff hv. Biochem Soc Trans. 2010 Oct;38(5):1225-9. doi: 10.1042/BST0381225. Biochem Soc Trans. 2010. PMID: 20863289
Systematic integration of experimental data and models in systems biology.
Li P, Dada JO, Jameson D, Spasic I, Swainston N, Carroll K, Dunn W, Khan F, Malys N, Messiha HL, Simeonidis E, Weichart D, Winder C, Wishart J, Broomhead DS, Goble CA, Gaskell SJ, Kell DB, Westerhoff HV, Mendes P, Paton NW. Li P, et al. Among authors: westerhoff hv. BMC Bioinformatics. 2010 Nov 29;11:582. doi: 10.1186/1471-2105-11-582. BMC Bioinformatics. 2010. PMID: 21114840 Free PMC article.
Emergence of the silicon human and network targeting drugs.
Kolodkin A, Boogerd FC, Plant N, Bruggeman FJ, Goncharuk V, Lunshof J, Moreno-Sanchez R, Yilmaz N, Bakker BM, Snoep JL, Balling R, Westerhoff HV. Kolodkin A, et al. Among authors: westerhoff hv. Eur J Pharm Sci. 2012 Jul 16;46(4):190-7. doi: 10.1016/j.ejps.2011.06.006. Epub 2011 Jun 16. Eur J Pharm Sci. 2012. PMID: 21704158
384 results