Guigó R - Search Results

1

Intron-centric estimation of alternative splicing from RNA-seq data.

Pervouchine DD, Knowles DG, Guigó R. Pervouchine DD, et al. Among authors: guigo r. Bioinformatics. 2013 Jan 15;29(2):273-4. doi: 10.1093/bioinformatics/bts678. Epub 2012 Nov 21. Bioinformatics. 2013. PMID: 23172860 Free PMC article.

2

gff2aplot: Plotting sequence comparisons.

Abril JF, Guigó R, Wiehe T. Abril JF, et al. Among authors: guigo r. Bioinformatics. 2003 Dec 12;19(18):2477-9. doi: 10.1093/bioinformatics/btg334. Bioinformatics. 2003. PMID: 14668236

3

BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations.

Kerhornou A, Guigó R. Kerhornou A, et al. Among authors: guigo r. Bioinformatics. 2007 Jul 15;23(14):1831-3. doi: 10.1093/bioinformatics/btm252. Epub 2007 May 12. Bioinformatics. 2007. PMID: 17496321

4

A general definition and nomenclature for alternative splicing events.

Sammeth M, Foissac S, Guigó R. Sammeth M, et al. Among authors: guigo r. PLoS Comput Biol. 2008 Aug 8;4(8):e1000147. doi: 10.1371/journal.pcbi.1000147. PLoS Comput Biol. 2008. PMID: 18688268 Free PMC article.

5

A user's guide to the encyclopedia of DNA elements (ENCODE).

ENCODE Project Consortium. ENCODE Project Consortium. PLoS Biol. 2011 Apr;9(4):e1001046. doi: 10.1371/journal.pbio.1001046. Epub 2011 Apr 19. PLoS Biol. 2011. PMID: 21526222 Free PMC article.

6

Fast computation and applications of genome mappability.

Derrien T, Estellé J, Marco Sola S, Knowles DG, Raineri E, Guigó R, Ribeca P. Derrien T, et al. Among authors: guigo r. PLoS One. 2012;7(1):e30377. doi: 10.1371/journal.pone.0030377. Epub 2012 Jan 19. PLoS One. 2012. PMID: 22276185 Free PMC article.

7

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs.

Tilgner H, Knowles DG, Johnson R, Davis CA, Chakrabortty S, Djebali S, Curado J, Snyder M, Gingeras TR, Guigó R. Tilgner H, et al. Among authors: guigo r. Genome Res. 2012 Sep;22(9):1616-25. doi: 10.1101/gr.134445.111. Genome Res. 2012. PMID: 22955974 Free PMC article.

8

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R. Derrien T, et al. Among authors: guigo r. Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111. Genome Res. 2012. PMID: 22955988 Free PMC article.

9

Modelling and simulating generic RNA-Seq experiments with the flux simulator.

Griebel T, Zacher B, Ribeca P, Raineri E, Lacroix V, Guigó R, Sammeth M. Griebel T, et al. Among authors: guigo r. Nucleic Acids Res. 2012 Nov 1;40(20):10073-83. doi: 10.1093/nar/gks666. Epub 2012 Sep 7. Nucleic Acids Res. 2012. PMID: 22962361 Free PMC article.

10

Grape RNA-Seq analysis pipeline environment.

Knowles DG, Röder M, Merkel A, Guigó R. Knowles DG, et al. Among authors: guigo r. Bioinformatics. 2013 Mar 1;29(5):614-21. doi: 10.1093/bioinformatics/btt016. Epub 2013 Jan 17. Bioinformatics. 2013. PMID: 23329413 Free PMC article.

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