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Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes.
Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN Jr, Surek B, Thomsen CJ, Villarreal JC, Wu X, Zhang Y, Deyholos MK, Wong GK. Johnson MT, et al. Among authors: depamphilis cw. PLoS One. 2012;7(11):e50226. doi: 10.1371/journal.pone.0050226. Epub 2012 Nov 21. PLoS One. 2012. PMID: 23185583 Free PMC article.
EST clustering error evaluation and correction.
Wang JP, Lindsay BG, Leebens-Mack J, Cui L, Wall K, Miller WC, dePamphilis CW. Wang JP, et al. Among authors: depamphilis cw. Bioinformatics. 2004 Nov 22;20(17):2973-84. doi: 10.1093/bioinformatics/bth342. Epub 2004 Jun 9. Bioinformatics. 2004. PMID: 15189818
Floral gene resources from basal angiosperms for comparative genomics research.
Albert VA, Soltis DE, Carlson JE, Farmerie WG, Wall PK, Ilut DC, Solow TM, Mueller LA, Landherr LL, Hu Y, Buzgo M, Kim S, Yoo MJ, Frohlich MW, Perl-Treves R, Schlarbaum SE, Bliss BJ, Zhang X, Tanksley SD, Oppenheimer DG, Soltis PS, Ma H, DePamphilis CW, Leebens-Mack JH. Albert VA, et al. Among authors: depamphilis cw. BMC Plant Biol. 2005 Mar 30;5:5. doi: 10.1186/1471-2229-5-5. BMC Plant Biol. 2005. PMID: 15799777 Free PMC article.
Widespread genome duplications throughout the history of flowering plants.
Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Soltis PS, Carlson JE, Arumuganathan K, Barakat A, Albert VA, Ma H, dePamphilis CW. Cui L, et al. Among authors: depamphilis cw. Genome Res. 2006 Jun;16(6):738-49. doi: 10.1101/gr.4825606. Epub 2006 May 15. Genome Res. 2006. PMID: 16702410 Free PMC article.
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).
Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, Koonin EV, Mishler BD, Philippe H, Pires JC, Qiu YL, Rhee SY, Sjölander K, Soltis DE, Soltis PS, Stevenson DW, Wall K, Warnow T, Zmasek C. Leebens-Mack J, et al. Among authors: depamphilis c. OMICS. 2006 Summer;10(2):231-7. doi: 10.1089/omi.2006.10.231. OMICS. 2006. PMID: 16901231 Free PMC article. Review.
148 results