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Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes.
Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN Jr, Surek B, Thomsen CJ, Villarreal JC, Wu X, Zhang Y, Deyholos MK, Wong GK. Johnson MT, et al. Among authors: rolf m. PLoS One. 2012;7(11):e50226. doi: 10.1371/journal.pone.0050226. Epub 2012 Nov 21. PLoS One. 2012. PMID: 23185583 Free PMC article.
A genome triplication associated with early diversification of the core eudicots.
Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK, Soltis DE, Depamphilis CW. Jiao Y, et al. Among authors: rolf m. Genome Biol. 2012 Jan 26;13(1):R3. doi: 10.1186/gb-2012-13-1-r3. Genome Biol. 2012. PMID: 22280555 Free PMC article.
Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes.
Cannon SB, McKain MR, Harkess A, Nelson MN, Dash S, Deyholos MK, Peng Y, Joyce B, Stewart CN Jr, Rolf M, Kutchan T, Tan X, Chen C, Zhang Y, Carpenter E, Wong GK, Doyle JJ, Leebens-Mack J. Cannon SB, et al. Among authors: rolf m. Mol Biol Evol. 2015 Jan;32(1):193-210. doi: 10.1093/molbev/msu296. Epub 2014 Oct 27. Mol Biol Evol. 2015. PMID: 25349287 Free PMC article.
Data access for the 1,000 Plants (1KP) project.
Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, Roure B, Philippe H, Ruhfel BR, Miles NW, Graham SW, Mathews S, Surek B, Melkonian M, Soltis DE, Soltis PS, Rothfels C, Pokorny L, Shaw JA, DeGironimo L, Stevenson DW, Villarreal JC, Chen T, Kutchan TM, Rolf M, Baucom RS, Deyholos MK, Samudrala R, Tian Z, Wu X, Sun X, Zhang Y, Wang J, Leebens-Mack J, Wong GK. Matasci N, et al. Among authors: rolf m. Gigascience. 2014 Oct 27;3:17. doi: 10.1186/2047-217X-3-17. eCollection 2014. Gigascience. 2014. PMID: 25625010 Free PMC article. Review.
Cyclotide discovery in Gentianales revisited--identification and characterization of cyclic cystine-knot peptides and their phylogenetic distribution in Rubiaceae plants.
Koehbach J, Attah AF, Berger A, Hellinger R, Kutchan TM, Carpenter EJ, Rolf M, Sonibare MA, Moody JO, Wong GK, Dessein S, Greger H, Gruber CW. Koehbach J, et al. Among authors: rolf m. Biopolymers. 2013 Sep;100(5):438-52. doi: 10.1002/bip.22328. Biopolymers. 2013. PMID: 23897543 Free PMC article.
Accurate mass-time tag library for LC/MS-based metabolite profiling of medicinal plants.
Cuthbertson DJ, Johnson SR, Piljac-Žegarac J, Kappel J, Schäfer S, Wüst M, Ketchum RE, Croteau RB, Marques JV, Davin LB, Lewis NG, Rolf M, Kutchan TM, Soejarto DD, Lange BM. Cuthbertson DJ, et al. Among authors: rolf m. Phytochemistry. 2013 Jul;91:187-97. doi: 10.1016/j.phytochem.2013.02.018. Epub 2013 Apr 16. Phytochemistry. 2013. PMID: 23597491 Free PMC article.
Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics.
Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP, Chen K, Cooper A, Vilkki J, Seabury CM, Caetano AR, Johnson GS, Brenneman RA, Hanotte O, Eggert LS, Wiener P, Kim JJ, Kim KS, Sonstegard TS, Van Tassell CP, Neibergs HL, McEwan JC, Brauning R, Coutinho LL, Babar ME, Wilson GA, McClure MC, Rolf MM, Kim J, Schnabel RD, Taylor JF. Decker JE, et al. Among authors: rolf mm. Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18644-9. doi: 10.1073/pnas.0904691106. Epub 2009 Oct 21. Proc Natl Acad Sci U S A. 2009. PMID: 19846765 Free PMC article.
69 results