Okuda S - Search Results

1

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.

Nakaya A, Katayama T, Itoh M, Hiranuka K, Kawashima S, Moriya Y, Okuda S, Tanaka M, Tokimatsu T, Yamanishi Y, Yoshizawa AC, Kanehisa M, Goto S. Nakaya A, et al. Among authors: okuda s. Nucleic Acids Res. 2013 Jan;41(Database issue):D353-7. doi: 10.1093/nar/gks1239. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193276 Free PMC article.

2

Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.

Okuda S, Kawashima S, Goto S, Kanehisa M. Okuda S, et al. Genome Inform. 2005;16(1):116-24. Genome Inform. 2005. PMID: 16362913

3

ODB: a database of operons accumulating known operons across multiple genomes.

Okuda S, Katayama T, Kawashima S, Goto S, Kanehisa M. Okuda S, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D358-62. doi: 10.1093/nar/gkj037. Nucleic Acids Res. 2006. PMID: 16381886 Free PMC article.

4

Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic.

Yoshizawa AC, Kawashima S, Okuda S, Fujita M, Itoh M, Moriya Y, Hattori M, Kanehisa M. Yoshizawa AC, et al. Among authors: okuda s. Traffic. 2006 Aug;7(8):1104-18. doi: 10.1111/j.1600-0854.2006.00451.x. Traffic. 2006. PMID: 16882042 Free article.

5

Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli.

Okuda S, Kawashima S, Kobayashi K, Ogasawara N, Kanehisa M, Goto S. Okuda S, et al. BMC Genomics. 2007 Feb 13;8:48. doi: 10.1186/1471-2164-8-48. BMC Genomics. 2007. PMID: 17298663 Free PMC article.

6

Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.

Tanaka M, Yamada T, Itoh M, Okuda S, Goto S, Kanehisa M. Tanaka M, et al. Among authors: okuda s. Genome Inform. 2006;17(1):230-9. Genome Inform. 2006. PMID: 17503372

7

KAAS: an automatic genome annotation and pathway reconstruction server.

Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M. Moriya Y, et al. Among authors: okuda s. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. doi: 10.1093/nar/gkm321. Epub 2007 May 25. Nucleic Acids Res. 2007. PMID: 17526522 Free PMC article.

8

The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes.

Hashimoto K, Yoshizawa AC, Okuda S, Kuma K, Goto S, Kanehisa M. Hashimoto K, et al. Among authors: okuda s. J Lipid Res. 2008 Jan;49(1):183-91. doi: 10.1194/jlr.M700377-JLR200. Epub 2007 Oct 7. J Lipid Res. 2008. PMID: 17921532 Free article.

9

[Integrated drug information resource].

Kanehisa M, Itoh M, Okuda S, Goto S, Ohta F. Kanehisa M, et al. Among authors: okuda s. Tanpakushitsu Kakusan Koso. 2007 Oct;52(12):1486-91. Tanpakushitsu Kakusan Koso. 2007. PMID: 17926556 Review. Japanese. No abstract available.

10

KEGG for linking genomes to life and the environment.

Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. Kanehisa M, et al. Among authors: okuda s. Nucleic Acids Res. 2008 Jan;36(Database issue):D480-4. doi: 10.1093/nar/gkm882. Epub 2007 Dec 12. Nucleic Acids Res. 2008. PMID: 18077471 Free PMC article.

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