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Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Lewis TE, Sillitoe I, Andreeva A, Blundell TL, Buchan DW, Chothia C, Cuff A, Dana JM, Filippis I, Gough J, Hunter S, Jones DT, Kelley LA, Kleywegt GJ, Minneci F, Mitchell A, Murzin AG, Ochoa-Montaño B, Rackham OJ, Smith J, Sternberg MJ, Velankar S, Yeats C, Orengo C. Lewis TE, et al. Among authors: jones dt. Nucleic Acids Res. 2013 Jan;41(Database issue):D499-507. doi: 10.1093/nar/gks1266. Epub 2012 Nov 30. Nucleic Acids Res. 2013. PMID: 23203986 Free PMC article.
CAFASP-1: critical assessment of fully automated structure prediction methods.
Fischer D, Barret C, Bryson K, Elofsson A, Godzik A, Jones D, Karplus KJ, Kelley LA, MacCallum RM, Pawowski K, Rost B, Rychlewski L, Sternberg M. Fischer D, et al. Proteins. 1999;Suppl 3:209-17. doi: 10.1002/(sici)1097-0134(1999)37:3+<209::aid-prot27>3.3.co;2-p. Proteins. 1999. PMID: 10526371
Protein structure prediction servers at University College London.
Bryson K, McGuffin LJ, Marsden RL, Ward JJ, Sodhi JS, Jones DT. Bryson K, et al. Among authors: jones dt. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W36-8. doi: 10.1093/nar/gki410. Nucleic Acids Res. 2005. PMID: 15980489 Free PMC article.
Introduction. Bioinformatics: from molecules to systems.
Jones DT, Sternberg MJ, Thornton JM. Jones DT, et al. Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):389-91. doi: 10.1098/rstb.2005.1811. Philos Trans R Soc Lond B Biol Sci. 2006. PMID: 16524827 Free PMC article. No abstract available.
Docking protein domains in contact space.
Lise S, Walker-Taylor A, Jones DT. Lise S, et al. Among authors: jones dt. BMC Bioinformatics. 2006 Jun 21;7:310. doi: 10.1186/1471-2105-7-310. BMC Bioinformatics. 2006. PMID: 16790041 Free PMC article.
The implications of alternative splicing in the ENCODE protein complement.
Tress ML, Martelli PL, Frankish A, Reeves GA, Wesselink JJ, Yeats C, Olason PI, Albrecht M, Hegyi H, Giorgetti A, Raimondo D, Lagarde J, Laskowski RA, López G, Sadowski MI, Watson JD, Fariselli P, Rossi I, Nagy A, Kai W, Størling Z, Orsini M, Assenov Y, Blankenburg H, Huthmacher C, Ramírez F, Schlicker A, Denoeud F, Jones P, Kerrien S, Orchard S, Antonarakis SE, Reymond A, Birney E, Brunak S, Casadio R, Guigo R, Harrow J, Hermjakob H, Jones DT, Lengauer T, Orengo CA, Patthy L, Thornton JM, Tramontano A, Valencia A. Tress ML, et al. Among authors: jones dt, jones p. Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5495-500. doi: 10.1073/pnas.0700800104. Epub 2007 Mar 19. Proc Natl Acad Sci U S A. 2007. PMID: 17372197 Free PMC article.
Inferring function using patterns of native disorder in proteins.
Lobley A, Swindells MB, Orengo CA, Jones DT. Lobley A, et al. Among authors: jones dt. PLoS Comput Biol. 2007 Aug;3(8):e162. doi: 10.1371/journal.pcbi.0030162. Epub 2007 Jul 3. PLoS Comput Biol. 2007. PMID: 17722973 Free PMC article.
ISPIDER Central: an integrated database web-server for proteomics.
Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG, Stevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P, Côté R, Hermjakob H, Pentony MM, Jones DT, Orengo CA, Hubbard SJ. Siepen JA, et al. Among authors: jones dt, jones p. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W485-90. doi: 10.1093/nar/gkn196. Epub 2008 Apr 25. Nucleic Acids Res. 2008. PMID: 18440977 Free PMC article.
962 results