Colak R - Search Results

1

The evolutionary landscape of alternative splicing in vertebrate species.

Barbosa-Morais NL, Irimia M, Pan Q, Xiong HY, Gueroussov S, Lee LJ, Slobodeniuc V, Kutter C, Watt S, Colak R, Kim T, Misquitta-Ali CM, Wilson MD, Kim PM, Odom DT, Frey BJ, Blencowe BJ. Barbosa-Morais NL, et al. Among authors: colak r. Science. 2012 Dec 21;338(6114):1587-93. doi: 10.1126/science.1230612. Science. 2012. PMID: 23258890

2

Tissue-specific alternative splicing remodels protein-protein interaction networks.

Ellis JD, Barrios-Rodiles M, Colak R, Irimia M, Kim T, Calarco JA, Wang X, Pan Q, O'Hanlon D, Kim PM, Wrana JL, Blencowe BJ. Ellis JD, et al. Among authors: colak r. Mol Cell. 2012 Jun 29;46(6):884-92. doi: 10.1016/j.molcel.2012.05.037. Mol Cell. 2012. PMID: 22749401 Free article.

3

Distinct types of disorder in the human proteome: functional implications for alternative splicing.

Colak R, Kim T, Michaut M, Sun M, Irimia M, Bellay J, Myers CL, Blencowe BJ, Kim PM. Colak R, et al. PLoS Comput Biol. 2013 Apr;9(4):e1003030. doi: 10.1371/journal.pcbi.1003030. Epub 2013 Apr 25. PLoS Comput Biol. 2013. PMID: 23633940 Free PMC article.

4

Semi-supervised Learning Predicts Approximately One Third of the Alternative Splicing Isoforms as Functional Proteins.

Hao Y, Colak R, Teyra J, Corbi-Verge C, Ignatchenko A, Hahne H, Wilhelm M, Kuster B, Braun P, Kaida D, Kislinger T, Kim PM. Hao Y, et al. Among authors: colak r. Cell Rep. 2015 Jul 14;12(2):183-9. doi: 10.1016/j.celrep.2015.06.031. Epub 2015 Jul 2. Cell Rep. 2015. PMID: 26146086 Free article.

5

Combining structural modeling with ensemble machine learning to accurately predict protein fold stability and binding affinity effects upon mutation.

Berliner N, Teyra J, Colak R, Garcia Lopez S, Kim PM. Berliner N, et al. Among authors: colak r. PLoS One. 2014 Sep 22;9(9):e107353. doi: 10.1371/journal.pone.0107353. eCollection 2014. PLoS One. 2014. PMID: 25243403 Free PMC article.

6

JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis.

Colak R, Kim T, Kazan H, Oh Y, Cruz M, Valladares-Salgado A, Peralta J, Escobedo J, Parra EJ, Kim PM, Goldenberg A. Colak R, et al. Bioinformatics. 2016 Jan 15;32(2):203-10. doi: 10.1093/bioinformatics/btv504. Epub 2015 Sep 26. Bioinformatics. 2016. PMID: 26411870 Free PMC article.

7

ELASPIC web-server: proteome-wide structure-based prediction of mutation effects on protein stability and binding affinity.

Witvliet DK, Strokach A, Giraldo-Forero AF, Teyra J, Colak R, Kim PM. Witvliet DK, et al. Among authors: colak r. Bioinformatics. 2016 May 15;32(10):1589-91. doi: 10.1093/bioinformatics/btw031. Epub 2016 Jan 21. Bioinformatics. 2016. PMID: 26801957

8

An omics perspective of protein disorder.

Bellay J, Michaut M, Kim T, Han S, Colak R, Myers CL, Kim PM. Bellay J, et al. Among authors: colak r. Mol Biosyst. 2012 Jan;8(1):185-93. doi: 10.1039/c1mb05235g. Epub 2011 Nov 18. Mol Biosyst. 2012. PMID: 22101230 Review.

9

PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization.

Dogrusoz U, Erson EZ, Giral E, Demir E, Babur O, Cetintas A, Colak R. Dogrusoz U, et al. Among authors: colak r. Bioinformatics. 2006 Feb 1;22(3):374-5. doi: 10.1093/bioinformatics/bti776. Epub 2005 Nov 15. Bioinformatics. 2006. PMID: 16287939

10

Inferring cancer subnetwork markers using density-constrained biclustering.

Dao P, Colak R, Salari R, Moser F, Davicioni E, Schönhuth A, Ester M. Dao P, et al. Among authors: colak r. Bioinformatics. 2010 Sep 15;26(18):i625-31. doi: 10.1093/bioinformatics/btq393. Bioinformatics. 2010. PMID: 20823331 Free PMC article.

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