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A survey of tools for variant analysis of next-generation genome sequencing data.
Pabinger S, Dander A, Fischer M, Snajder R, Sperk M, Efremova M, Krabichler B, Speicher MR, Zschocke J, Trajanoski Z. Pabinger S, et al. Among authors: speicher mr. Brief Bioinform. 2014 Mar;15(2):256-78. doi: 10.1093/bib/bbs086. Epub 2013 Jan 21. Brief Bioinform. 2014. PMID: 23341494 Free PMC article.
Loss of adipose triglyceride lipase is associated with human cancer and induces mouse pulmonary neoplasia.
Al-Zoughbi W, Pichler M, Gorkiewicz G, Guertl-Lackner B, Haybaeck J, Jahn SW, Lackner C, Liegl-Atzwanger B, Popper H, Schauer S, Nusshold E, Kindt AS, Trajanoski Z, Speicher MR, Haemmerle G, Zimmermann R, Zechner R, Vesely PW, Hoefler G. Al-Zoughbi W, et al. Among authors: speicher mr. Oncotarget. 2016 Jun 7;7(23):33832-40. doi: 10.18632/oncotarget.9418. Oncotarget. 2016. PMID: 27213586 Free PMC article.
Integrative Analyses of Colorectal Cancer Show Immunoscore Is a Stronger Predictor of Patient Survival Than Microsatellite Instability.
Mlecnik B, Bindea G, Angell HK, Maby P, Angelova M, Tougeron D, Church SE, Lafontaine L, Fischer M, Fredriksen T, Sasso M, Bilocq AM, Kirilovsky A, Obenauf AC, Hamieh M, Berger A, Bruneval P, Tuech JJ, Sabourin JC, Le Pessot F, Mauillon J, Rafii A, Laurent-Puig P, Speicher MR, Trajanoski Z, Michel P, Sesboüe R, Frebourg T, Pagès F, Valge-Archer V, Latouche JB, Galon J. Mlecnik B, et al. Among authors: speicher mr. Immunity. 2016 Mar 15;44(3):698-711. doi: 10.1016/j.immuni.2016.02.025. Immunity. 2016. PMID: 26982367 Free article.
Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing.
Heitzer E, Auer M, Gasch C, Pichler M, Ulz P, Hoffmann EM, Lax S, Waldispuehl-Geigl J, Mauermann O, Lackner C, Höfler G, Eisner F, Sill H, Samonigg H, Pantel K, Riethdorf S, Bauernhofer T, Geigl JB, Speicher MR. Heitzer E, et al. Among authors: speicher mr. Cancer Res. 2013 May 15;73(10):2965-75. doi: 10.1158/0008-5472.CAN-12-4140. Epub 2013 Mar 7. Cancer Res. 2013. PMID: 23471846
Comparison of three commercial decision support platforms for matching of next-generation sequencing results with therapies in patients with cancer.
Perakis SO, Weber S, Zhou Q, Graf R, Hojas S, Riedl JM, Gerger A, Dandachi N, Balic M, Hoefler G, Schuuring E, Groen HJM, Geigl JB, Heitzer E, Speicher MR. Perakis SO, et al. Among authors: speicher mr. ESMO Open. 2020 Sep;5(5):e000872. doi: 10.1136/esmoopen-2020-000872. ESMO Open. 2020. PMID: 32967919 Free PMC article.
Inferring expressed genes by whole-genome sequencing of plasma DNA.
Ulz P, Thallinger GG, Auer M, Graf R, Kashofer K, Jahn SW, Abete L, Pristauz G, Petru E, Geigl JB, Heitzer E, Speicher MR. Ulz P, et al. Among authors: speicher mr. Nat Genet. 2016 Oct;48(10):1273-8. doi: 10.1038/ng.3648. Epub 2016 Aug 29. Nat Genet. 2016. PMID: 27571261
215 results