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A survey of tools for variant analysis of next-generation genome sequencing data.
Pabinger S, Dander A, Fischer M, Snajder R, Sperk M, Efremova M, Krabichler B, Speicher MR, Zschocke J, Trajanoski Z. Pabinger S, et al. Among authors: sperk m. Brief Bioinform. 2014 Mar;15(2):256-78. doi: 10.1093/bib/bbs086. Epub 2013 Jan 21. Brief Bioinform. 2014. PMID: 23341494 Free PMC article.
High Prevalence of SARS-CoV-2 Omicron Infection Despite High Seroprevalence, Sweden, 2022.
Groenheit R, Bacchus P, Galanis I, Sondén K, Bujila I, Efimova T, Garli F, Lindsjö OK, Mansjö M, Movert E, Pettke A, Rapp M, Sperk M, Söderholm S, Asin KV, Zanetti S, Karlberg ML, Bråve A, Blom K, Klingström J. Groenheit R, et al. Among authors: sperk m. Emerg Infect Dis. 2023 Jun;29(6):1240-1243. doi: 10.3201/eid2906.221862. Epub 2023 May 4. Emerg Infect Dis. 2023. PMID: 37141616 Free PMC article.
Rapid emergence of omicron sublineages expressing spike protein R346T.
Groenheit R, Galanis I, Sondén K, Sperk M, Movert E, Bacchus P, Efimova T, Petersson L, Rapp M, Sahlén V, Söderholm S, Valentin Asin K, Zanetti S, Lind Karlberg M, Bråve A, Klingström J, Blom K. Groenheit R, et al. Among authors: sperk m. Lancet Reg Health Eur. 2023 Jan;24:100564. doi: 10.1016/j.lanepe.2022.100564. Epub 2022 Dec 10. Lancet Reg Health Eur. 2023. PMID: 36533118 Free PMC article. No abstract available.
Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity.
Ambikan AT, Yang H, Krishnan S, Svensson Akusjärvi S, Gupta S, Lourda M, Sperk M, Arif M, Zhang C, Nordqvist H, Ponnan SM, Sönnerborg A, Treutiger CJ, O'Mahony L, Mardinoglu A, Benfeitas R, Neogi U. Ambikan AT, et al. Among authors: sperk m. Cell Syst. 2022 Aug 17;13(8):665-681.e4. doi: 10.1016/j.cels.2022.06.006. Epub 2022 Jul 8. Cell Syst. 2022. PMID: 35933992 Free PMC article.
Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals.
Svensson Akusjärvi S, Krishnan S, Jütte BB, Ambikan AT, Gupta S, Rodriguez JE, Végvári Á, Sperk M, Nowak P, Vesterbacka J, Svensson JP, Sönnerborg A, Neogi U. Svensson Akusjärvi S, et al. Among authors: sperk m. Commun Biol. 2022 Apr 13;5(1):357. doi: 10.1038/s42003-022-03315-x. Commun Biol. 2022. PMID: 35418589 Free PMC article.
Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection.
Mikaeloff F, Svensson Akusjärvi S, Ikomey GM, Krishnan S, Sperk M, Gupta S, Magdaleno GDV, Escós A, Lyonga E, Okomo MC, Tagne CT, Babu H, Lorson CL, Végvári Á, Banerjea AC, Kele J, Hanna LE, Singh K, de Magalhães JP, Benfeitas R, Neogi U. Mikaeloff F, et al. Among authors: sperk m. Commun Biol. 2022 Jan 11;5(1):27. doi: 10.1038/s42003-021-02985-3. Commun Biol. 2022. PMID: 35017663 Free PMC article.
Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling.
Akusjärvi SS, Ambikan AT, Krishnan S, Gupta S, Sperk M, Végvári Á, Mikaeloff F, Healy K, Vesterbacka J, Nowak P, Sönnerborg A, Neogi U. Akusjärvi SS, et al. Among authors: sperk m. iScience. 2021 Dec 10;25(1):103607. doi: 10.1016/j.isci.2021.103607. eCollection 2022 Jan 21. iScience. 2021. PMID: 35005552 Free PMC article.
23 results