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A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.
Matzke MM, Brown JN, Gritsenko MA, Metz TO, Pounds JG, Rodland KD, Shukla AK, Smith RD, Waters KM, McDermott JE, Webb-Robertson BJ. Matzke MM, et al. Among authors: pounds jg. Proteomics. 2013 Feb;13(3-4):493-503. doi: 10.1002/pmic.201200269. Epub 2012 Nov 8. Proteomics. 2013. PMID: 23019139 Free PMC article. Review.
Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics.
Webb-Robertson BJ, Wiberg HK, Matzke MM, Brown JN, Wang J, McDermott JE, Smith RD, Rodland KD, Metz TO, Pounds JG, Waters KM. Webb-Robertson BJ, et al. Among authors: pounds jg. J Proteome Res. 2015 May 1;14(5):1993-2001. doi: 10.1021/pr501138h. Epub 2015 Apr 22. J Proteome Res. 2015. PMID: 25855118 Free PMC article. Review.
Improved quality control processing of peptide-centric LC-MS proteomics data.
Matzke MM, Waters KM, Metz TO, Jacobs JM, Sims AC, Baric RS, Pounds JG, Webb-Robertson BJ. Matzke MM, et al. Among authors: pounds jg. Bioinformatics. 2011 Oct 15;27(20):2866-72. doi: 10.1093/bioinformatics/btr479. Epub 2011 Aug 18. Bioinformatics. 2011. PMID: 21852304 Free PMC article.
Data merging for integrated microarray and proteomic analysis.
Waters KM, Pounds JG, Thrall BD. Waters KM, et al. Among authors: pounds jg. Brief Funct Genomic Proteomic. 2006 Dec;5(4):261-72. doi: 10.1093/bfgp/ell019. Epub 2006 May 10. Brief Funct Genomic Proteomic. 2006. PMID: 16772273 Review.
Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size.
Zhang H, Burnum KE, Luna ML, Petritis BO, Kim JS, Qian WJ, Moore RJ, Heredia-Langner A, Webb-Robertson BJ, Thrall BD, Camp DG 2nd, Smith RD, Pounds JG, Liu T. Zhang H, et al. Among authors: pounds jg. Proteomics. 2011 Dec;11(23):4569-77. doi: 10.1002/pmic.201100037. Epub 2011 Nov 4. Proteomics. 2011. PMID: 21956884 Free PMC article.
96 results