Kharchenko PV - Search Results

1

Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming.

Apostolou E, Ferrari F, Walsh RM, Bar-Nur O, Stadtfeld M, Cheloufi S, Stuart HT, Polo JM, Ohsumi TK, Borowsky ML, Kharchenko PV, Park PJ, Hochedlinger K. Apostolou E, et al. Among authors: kharchenko pv. Cell Stem Cell. 2013 Jun 6;12(6):699-712. doi: 10.1016/j.stem.2013.04.013. Epub 2013 May 9. Cell Stem Cell. 2013. PMID: 23665121 Free PMC article.

2

scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data.

Faure L, Soldatov R, Kharchenko PV, Adameyko I. Faure L, et al. Among authors: kharchenko pv. Bioinformatics. 2023 Jan 1;39(1):btac746. doi: 10.1093/bioinformatics/btac746. Bioinformatics. 2023. PMID: 36394263 Free PMC article.

3

Differential H3K4 methylation identifies developmentally poised hematopoietic genes.

Orford K, Kharchenko P, Lai W, Dao MC, Worhunsky DJ, Ferro A, Janzen V, Park PJ, Scadden DT. Orford K, et al. Dev Cell. 2008 May;14(5):798-809. doi: 10.1016/j.devcel.2008.04.002. Dev Cell. 2008. PMID: 18477461 Free PMC article.

4

Nucleosome positioning in human HOX gene clusters.

Kharchenko PV, Woo CJ, Tolstorukov MY, Kingston RE, Park PJ. Kharchenko PV, et al. Genome Res. 2008 Oct;18(10):1554-61. doi: 10.1101/gr.075952.107. Epub 2008 Aug 22. Genome Res. 2008. PMID: 18723689 Free PMC article.

5

A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome.

Alekseyenko AA, Peng S, Larschan E, Gorchakov AA, Lee OK, Kharchenko P, McGrath SD, Wang CI, Mardis ER, Park PJ, Kuroda MI. Alekseyenko AA, et al. Cell. 2008 Aug 22;134(4):599-609. doi: 10.1016/j.cell.2008.06.033. Cell. 2008. PMID: 18724933 Free PMC article.

6

Design and analysis of ChIP-seq experiments for DNA-binding proteins.

Kharchenko PV, Tolstorukov MY, Park PJ. Kharchenko PV, et al. Nat Biotechnol. 2008 Dec;26(12):1351-9. doi: 10.1038/nbt.1508. Epub 2008 Nov 16. Nat Biotechnol. 2008. PMID: 19029915 Free PMC article.

7

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes.

Tolstorukov MY, Kharchenko PV, Goldman JA, Kingston RE, Park PJ. Tolstorukov MY, et al. Among authors: kharchenko pv. Genome Res. 2009 Jun;19(6):967-77. doi: 10.1101/gr.084830.108. Epub 2009 Feb 26. Genome Res. 2009. PMID: 19246569 Free PMC article.

8

Long-range spreading of dosage compensation in Drosophila captures transcribed autosomal genes inserted on X.

Gorchakov AA, Alekseyenko AA, Kharchenko P, Park PJ, Kuroda MI. Gorchakov AA, et al. Genes Dev. 2009 Oct 1;23(19):2266-71. doi: 10.1101/gad.1840409. Genes Dev. 2009. PMID: 19797766 Free PMC article.

9

A region of the human HOXD cluster that confers polycomb-group responsiveness.

Woo CJ, Kharchenko PV, Daheron L, Park PJ, Kingston RE. Woo CJ, et al. Among authors: kharchenko pv. Cell. 2010 Jan 8;140(1):99-110. doi: 10.1016/j.cell.2009.12.022. Cell. 2010. PMID: 20085705 Free PMC article.

10

Estimating enrichment of repetitive elements from high-throughput sequence data.

Day DS, Luquette LJ, Park PJ, Kharchenko PV. Day DS, et al. Among authors: kharchenko pv. Genome Biol. 2010;11(6):R69. doi: 10.1186/gb-2010-11-6-r69. Epub 2010 Jun 28. Genome Biol. 2010. PMID: 20584328 Free PMC article.

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