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The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
Genome Biol. 2013 Jun 3;14(6):r53. doi: 10.1186/gb-2013-14-6-r53.
Genome Biol. 2013.
PMID: 23731509
Free PMC article.
Identification of Climate and Genetic Factors That Control Fat Content and Fatty Acid Composition of Theobroma cacao L. Beans.
Mustiga GM, Morrissey J, Stack JC, DuVal A, Royaert S, Jansen J, Bizzotto C, Villela-Dias C, Mei L, Cahoon EB, Seguine E, Marelli JP, Motamayor JC.
Mustiga GM, et al. Among authors: stack jc.
Front Plant Sci. 2019 Oct 14;10:1159. doi: 10.3389/fpls.2019.01159. eCollection 2019.
Front Plant Sci. 2019.
PMID: 31681345
Free PMC article.
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Low-cost assembly of a cacao crop genome is able to resolve complex heterozygous bubbles.
Morrissey J, Stack JC, Valls R, Motamayor JC.
Morrissey J, et al. Among authors: stack jc.
Hortic Res. 2019 Apr 6;6:44. doi: 10.1038/s41438-019-0125-7. eCollection 2019.
Hortic Res. 2019.
PMID: 30962937
Free PMC article.
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Evolution of equine influenza virus in vaccinated horses.
Murcia PR, Baillie GJ, Stack JC, Jervis C, Elton D, Mumford JA, Daly J, Kellam P, Grenfell BT, Holmes EC, Wood JL.
Murcia PR, et al. Among authors: stack jc.
J Virol. 2013 Apr;87(8):4768-71. doi: 10.1128/JVI.03379-12. Epub 2013 Feb 6.
J Virol. 2013.
PMID: 23388708
Free PMC article.
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Inferring the inter-host transmission of influenza A virus using patterns of intra-host genetic variation.
Stack JC, Murcia PR, Grenfell BT, Wood JL, Holmes EC.
Stack JC, et al.
Proc Biol Sci. 2013 Jan 7;280(1750):20122173. doi: 10.1098/rspb.2012.2173. Epub 2012 Nov 7.
Proc Biol Sci. 2013.
PMID: 23135678
Free PMC article.
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Inferring population-level contact heterogeneity from common epidemic data.
Stack JC, Bansal S, Anil Kumar VS, Grenfell B.
Stack JC, et al.
J R Soc Interface. 2013 Jan 6;10(78):20120578. doi: 10.1098/rsif.2012.0578. Epub 2012 Nov 8.
J R Soc Interface. 2013.
PMID: 23034353
Free PMC article.
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Deep sequencing reveals persistence of intra- and inter-host genetic diversity in natural and greenhouse populations of zucchini yellow mosaic virus.
Simmons HE, Dunham JP, Stack JC, Dickins BJA, Pagán I, Holmes EC, Stephenson AG.
Simmons HE, et al. Among authors: stack jc.
J Gen Virol. 2012 Aug;93(Pt 8):1831-1840. doi: 10.1099/vir.0.042622-0. Epub 2012 May 16.
J Gen Virol. 2012.
PMID: 22592263
Free PMC article.
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Protocols for sampling viral sequences to study epidemic dynamics.
Stack JC, Welch JD, Ferrari MJ, Shapiro BU, Grenfell BT.
Stack JC, et al.
J R Soc Interface. 2010 Jul 6;7(48):1119-27. doi: 10.1098/rsif.2009.0530. Epub 2010 Feb 10.
J R Soc Interface. 2010.
PMID: 20147314
Free PMC article.
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