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1,222 results

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Page 1
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E. Orlando L, et al. Among authors: thompson jf. Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26. Nature. 2013. PMID: 23803765
True single-molecule DNA sequencing of a pleistocene horse bone.
Orlando L, Ginolhac A, Raghavan M, Vilstrup J, Rasmussen M, Magnussen K, Steinmann KE, Kapranov P, Thompson JF, Zazula G, Froese D, Moltke I, Shapiro B, Hofreiter M, Al-Rasheid KA, Gilbert MT, Willerslev E. Orlando L, et al. Among authors: thompson jf. Genome Res. 2011 Oct;21(10):1705-19. doi: 10.1101/gr.122747.111. Epub 2011 Jul 29. Genome Res. 2011. PMID: 21803858 Free PMC article.
Improving the performance of true single molecule sequencing for ancient DNA.
Ginolhac A, Vilstrup J, Stenderup J, Rasmussen M, Stiller M, Shapiro B, Zazula G, Froese D, Steinmann KE, Thompson JF, Al-Rasheid KA, Gilbert TM, Willerslev E, Orlando L. Ginolhac A, et al. Among authors: thompson jf. BMC Genomics. 2012 May 10;13:177. doi: 10.1186/1471-2164-13-177. BMC Genomics. 2012. PMID: 22574620 Free PMC article.
Improving ancient DNA read mapping against modern reference genomes.
Schubert M, Ginolhac A, Lindgreen S, Thompson JF, Al-Rasheid KA, Willerslev E, Krogh A, Orlando L. Schubert M, et al. Among authors: thompson jf. BMC Genomics. 2012 May 10;13:178. doi: 10.1186/1471-2164-13-178. BMC Genomics. 2012. PMID: 22574660 Free PMC article.
What would you do if you could sequence everything?
Kahvejian A, Quackenbush J, Thompson JF. Kahvejian A, et al. Among authors: thompson jf. Nat Biotechnol. 2008 Oct;26(10):1125-33. doi: 10.1038/nbt1494. Nat Biotechnol. 2008. PMID: 18846086 Free PMC article.
Virtual terminator nucleotides for next-generation DNA sequencing.
Bowers J, Mitchell J, Beer E, Buzby PR, Causey M, Efcavitch JW, Jarosz M, Krzymanska-Olejnik E, Kung L, Lipson D, Lowman GM, Marappan S, McInerney P, Platt A, Roy A, Siddiqi SM, Steinmann K, Thompson JF. Bowers J, et al. Among authors: thompson jf. Nat Methods. 2009 Aug;6(8):593-5. doi: 10.1038/nmeth.1354. Epub 2009 Jul 20. Nat Methods. 2009. PMID: 19620973 Free PMC article.
Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.
Kooner JS, Chambers JC, Aguilar-Salinas CA, Hinds DA, Hyde CL, Warnes GR, Gómez Pérez FJ, Frazer KA, Elliott P, Scott J, Milos PM, Cox DR, Thompson JF. Kooner JS, et al. Among authors: thompson jf. Nat Genet. 2008 Feb;40(2):149-51. doi: 10.1038/ng.2007.61. Epub 2008 Jan 13. Nat Genet. 2008. PMID: 18193046
New models of collaboration in genome-wide association studies: the Genetic Association Information Network.
GAIN Collaborative Research Group; Manolio TA, Rodriguez LL, Brooks L, Abecasis G; Collaborative Association Study of Psoriasis; Ballinger D, Daly M, Donnelly P, Faraone SV; International Multi-Center ADHD Genetics Project; Frazer K, Gabriel S, Gejman P; Molecular Genetics of Schizophrenia Collaboration; Guttmacher A, Harris EL, Insel T, Kelsoe JR; Bipolar Genome Study; Lander E, McCowin N, Mailman MD, Nabel E, Ostell J, Pugh E, Sherry S, Sullivan PF; Major Depression Stage 1 Genomewide Association in Population-Based Samples Study; Thompson JF, Warram J; Genetics of Kidneys in Diabetes (GoKinD) Study; Wholley D, Milos PM, Collins FS. GAIN Collaborative Research Group, et al. Among authors: thompson jf. Nat Genet. 2007 Sep;39(9):1045-51. doi: 10.1038/ng2127. Nat Genet. 2007. PMID: 17728769
Direct RNA sequencing.
Ozsolak F, Platt AR, Jones DR, Reifenberger JG, Sass LE, McInerney P, Thompson JF, Bowers J, Jarosz M, Milos PM. Ozsolak F, et al. Among authors: thompson jf. Nature. 2009 Oct 8;461(7265):814-8. doi: 10.1038/nature08390. Epub 2009 Sep 23. Nature. 2009. PMID: 19776739
Quantification of the yeast transcriptome by single-molecule sequencing.
Lipson D, Raz T, Kieu A, Jones DR, Giladi E, Thayer E, Thompson JF, Letovsky S, Milos P, Causey M. Lipson D, et al. Among authors: thompson jf. Nat Biotechnol. 2009 Jul;27(7):652-8. doi: 10.1038/nbt.1551. Epub 2009 Jul 5. Nat Biotechnol. 2009. PMID: 19581875
1,222 results