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The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text.
PLoS One. 2013 Jun 18;8(6):e65390. doi: 10.1371/journal.pone.0065390. Print 2013.
PLoS One. 2013.
PMID: 23823062
Free PMC article.
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life.
Pafilis E, Frankild SP, Schnetzer J, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou K, Leary P, Hammock J, Schulz K, Parr CS, Arvanitidis C, Jensen LJ.
Pafilis E, et al. Among authors: frankild sp.
Bioinformatics. 2015 Jun 1;31(11):1872-4. doi: 10.1093/bioinformatics/btv045. Epub 2015 Jan 24.
Bioinformatics. 2015.
PMID: 25619994
Free PMC article.
Item in Clipboard
Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text.
Eriksson R, Jensen PB, Frankild S, Jensen LJ, Brunak S.
Eriksson R, et al.
J Am Med Inform Assoc. 2013 Sep-Oct;20(5):947-53. doi: 10.1136/amiajnl-2013-001708. Epub 2013 May 23.
J Am Med Inform Assoc. 2013.
PMID: 23703825
Free PMC article.
Item in Clipboard
STRING v9.1: protein-protein interaction networks, with increased coverage and integration.
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ.
Franceschini A, et al.
Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15. doi: 10.1093/nar/gks1094. Epub 2012 Nov 29.
Nucleic Acids Res. 2013.
PMID: 23203871
Free PMC article.
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Modelling the human immune system by combining bioinformatics and systems biology approaches.
Rapin N, Kesmir C, Frankild S, Nielsen M, Lundegaard C, Brunak S, Lund O.
Rapin N, et al.
J Biol Phys. 2006 Oct;32(3-4):335-53. doi: 10.1007/s10867-006-9019-7. Epub 2006 Oct 27.
J Biol Phys. 2006.
PMID: 19669470
Free PMC article.
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Amino acid similarity accounts for T cell cross-reactivity and for "holes" in the T cell repertoire.
Frankild S, de Boer RJ, Lund O, Nielsen M, Kesmir C.
Frankild S, et al.
PLoS One. 2008 Mar 19;3(3):e1831. doi: 10.1371/journal.pone.0001831.
PLoS One. 2008.
PMID: 18350167
Free PMC article.
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A community resource benchmarking predictions of peptide binding to MHC-I molecules.
Peters B, Bui HH, Frankild S, Nielson M, Lundegaard C, Kostem E, Basch D, Lamberth K, Harndahl M, Fleri W, Wilson SS, Sidney J, Lund O, Buus S, Sette A.
Peters B, et al.
PLoS Comput Biol. 2006 Jun 9;2(6):e65. doi: 10.1371/journal.pcbi.0020065. Epub 2006 Jun 9.
PLoS Comput Biol. 2006.
PMID: 16789818
Free PMC article.
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Immune epitope database analysis resource (IEDB-AR).
Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B.
Zhang Q, et al.
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. doi: 10.1093/nar/gkn254. Epub 2008 May 31.
Nucleic Acids Res. 2008.
PMID: 18515843
Free PMC article.
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