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Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples.
Riley DR, Sieber KB, Robinson KM, White JR, Ganesan A, Nourbakhsh S, Dunning Hotopp JC. Riley DR, et al. Among authors: dunning hotopp jc. PLoS Comput Biol. 2013;9(6):e1003107. doi: 10.1371/journal.pcbi.1003107. Epub 2013 Jun 20. PLoS Comput Biol. 2013. PMID: 23840181 Free PMC article.
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.
Donati C, Hiller NL, Tettelin H, Muzzi A, Croucher NJ, Angiuoli SV, Oggioni M, Dunning Hotopp JC, Hu FZ, Riley DR, Covacci A, Mitchell TJ, Bentley SD, Kilian M, Ehrlich GD, Rappuoli R, Moxon ER, Masignani V. Donati C, et al. Among authors: dunning hotopp jc. Genome Biol. 2010;11(10):R107. doi: 10.1186/gb-2010-11-10-r107. Epub 2010 Oct 29. Genome Biol. 2010. PMID: 21034474 Free PMC article.
Horizontal gene transfer between bacteria and animals.
Dunning Hotopp JC. Dunning Hotopp JC. Trends Genet. 2011 Apr;27(4):157-63. doi: 10.1016/j.tig.2011.01.005. Epub 2011 Feb 18. Trends Genet. 2011. PMID: 21334091 Free PMC article. Review.
Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination.
Budroni S, Siena E, Dunning Hotopp JC, Seib KL, Serruto D, Nofroni C, Comanducci M, Riley DR, Daugherty SC, Angiuoli SV, Covacci A, Pizza M, Rappuoli R, Moxon ER, Tettelin H, Medini D. Budroni S, et al. Among authors: dunning hotopp jc. Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4494-9. doi: 10.1073/pnas.1019751108. Epub 2011 Feb 28. Proc Natl Acad Sci U S A. 2011. PMID: 21368196 Free PMC article.
Using Sybil for interactive comparative genomics of microbes on the web.
Riley DR, Angiuoli SV, Crabtree J, Dunning Hotopp JC, Tettelin H. Riley DR, et al. Among authors: dunning hotopp jc. Bioinformatics. 2012 Jan 15;28(2):160-6. doi: 10.1093/bioinformatics/btr652. Epub 2011 Nov 24. Bioinformatics. 2012. PMID: 22121156 Free PMC article.
Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi.
Ioannidis P, Johnston KL, Riley DR, Kumar N, White JR, Olarte KT, Ott S, Tallon LJ, Foster JM, Taylor MJ, Dunning Hotopp JC. Ioannidis P, et al. Among authors: dunning hotopp jc. BMC Genomics. 2013 Sep 22;14:639. doi: 10.1186/1471-2164-14-639. BMC Genomics. 2013. PMID: 24053607 Free PMC article.
77 results