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TwinBLAST: When Two Is Better than One.
Dunning Hotopp JC, Matsumura J, Bromley RE, Riley DR, Agrawal S, Sparklin B, Mattick J, Crabtree J, Mahurkar A. Dunning Hotopp JC, et al. Among authors: riley dr. Microbiol Resour Announc. 2019 Aug 29;8(35):e00842-19. doi: 10.1128/MRA.00842-19. Microbiol Resour Announc. 2019. PMID: 31467106 Free PMC article.
A machine learning approach for somatic mutation discovery.
Wood DE, White JR, Georgiadis A, Van Emburgh B, Parpart-Li S, Mitchell J, Anagnostou V, Niknafs N, Karchin R, Papp E, McCord C, LoVerso P, Riley D, Diaz LA Jr, Jones S, Sausen M, Velculescu VE, Angiuoli SV. Wood DE, et al. Sci Transl Med. 2018 Sep 5;10(457):eaar7939. doi: 10.1126/scitranslmed.aar7939. Sci Transl Med. 2018. PMID: 30185652 Free PMC article.
Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination.
Budroni S, Siena E, Dunning Hotopp JC, Seib KL, Serruto D, Nofroni C, Comanducci M, Riley DR, Daugherty SC, Angiuoli SV, Covacci A, Pizza M, Rappuoli R, Moxon ER, Tettelin H, Medini D. Budroni S, et al. Among authors: riley dr. Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4494-9. doi: 10.1073/pnas.1019751108. Epub 2011 Feb 28. Proc Natl Acad Sci U S A. 2011. PMID: 21368196 Free PMC article.
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.
Donati C, Hiller NL, Tettelin H, Muzzi A, Croucher NJ, Angiuoli SV, Oggioni M, Dunning Hotopp JC, Hu FZ, Riley DR, Covacci A, Mitchell TJ, Bentley SD, Kilian M, Ehrlich GD, Rappuoli R, Moxon ER, Masignani V. Donati C, et al. Among authors: riley dr. Genome Biol. 2010;11(10):R107. doi: 10.1186/gb-2010-11-10-r107. Epub 2010 Oct 29. Genome Biol. 2010. PMID: 21034474 Free PMC article.
Noninvasive Detection of Microsatellite Instability and High Tumor Mutation Burden in Cancer Patients Treated with PD-1 Blockade.
Georgiadis A, Durham JN, Keefer LA, Bartlett BR, Zielonka M, Murphy D, White JR, Lu S, Verner EL, Ruan F, Riley D, Anders RA, Gedvilaite E, Angiuoli S, Jones S, Velculescu VE, Le DT, Diaz LA Jr, Sausen M. Georgiadis A, et al. Clin Cancer Res. 2019 Dec 1;25(23):7024-7034. doi: 10.1158/1078-0432.CCR-19-1372. Epub 2019 Sep 10. Clin Cancer Res. 2019. PMID: 31506389 Free PMC article.
48 results