Langenberger D - Search Results

1

Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks.

Holdt LM, Hoffmann S, Sass K, Langenberger D, Scholz M, Krohn K, Finstermeier K, Stahringer A, Wilfert W, Beutner F, Gielen S, Schuler G, Gäbel G, Bergert H, Bechmann I, Stadler PF, Thiery J, Teupser D. Holdt LM, et al. Among authors: langenberger d. PLoS Genet. 2013;9(7):e1003588. doi: 10.1371/journal.pgen.1003588. Epub 2013 Jul 4. PLoS Genet. 2013. PMID: 23861667 Free PMC article.

2

Dicer-processed small RNAs: rules and exceptions.

Langenberger D, Çakir MV, Hoffmann S, Stadler PF. Langenberger D, et al. J Exp Zool B Mol Dev Evol. 2013 Jan;320(1):35-46. doi: 10.1002/jez.b.22481. Epub 2012 Nov 16. J Exp Zool B Mol Dev Evol. 2013. PMID: 23165937

3

DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.

Fasold M, Langenberger D, Binder H, Stadler PF, Hoffmann S. Fasold M, et al. Among authors: langenberger d. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W112-7. doi: 10.1093/nar/gkr357. Epub 2011 May 27. Nucleic Acids Res. 2011. PMID: 21622957 Free PMC article.

4

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.

Langenberger D, Pundhir S, Ekstrøm CT, Stadler PF, Hoffmann S, Gorodkin J. Langenberger D, et al. Bioinformatics. 2012 Jan 1;28(1):17-24. doi: 10.1093/bioinformatics/btr598. Epub 2011 Nov 3. Bioinformatics. 2012. PMID: 22053076 Free PMC article.

5

Traces of post-transcriptional RNA modifications in deep sequencing data.

Findeiss S, Langenberger D, Stadler PF, Hoffmann S. Findeiss S, et al. Among authors: langenberger d. Biol Chem. 2011 Apr;392(4):305-13. doi: 10.1515/BC.2011.043. Epub 2011 Feb 24. Biol Chem. 2011. PMID: 21345160

6

Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.

Doose G, Alexis M, Kirsch R, Findeiß S, Langenberger D, Machné R, Mörl M, Hoffmann S, Stadler PF. Doose G, et al. Among authors: langenberger d. RNA Biol. 2013 Jul;10(7):1204-10. doi: 10.4161/rna.24972. Epub 2013 May 13. RNA Biol. 2013. PMID: 23702463 Free PMC article.

7

Computational prediction of microRNA genes.

Hertel J, Langenberger D, Stadler PF. Hertel J, et al. Among authors: langenberger d. Methods Mol Biol. 2014;1097:437-56. doi: 10.1007/978-1-62703-709-9_20. Methods Mol Biol. 2014. PMID: 24639171 Review.

8

Identification and classification of small RNAs in transcriptome sequence data.

Langenberger D, Bermudez-Santana CI, Stadler PF, Hoffmann S. Langenberger D, et al. Pac Symp Biocomput. 2010:80-7. doi: 10.1142/9789814295291_0010. Pac Symp Biocomput. 2010. PMID: 19908360 Free article.

9

Evidence for human microRNA-offset RNAs in small RNA sequencing data.

Langenberger D, Bermudez-Santana C, Hertel J, Hoffmann S, Khaitovich P, Stadler PF. Langenberger D, et al. Bioinformatics. 2009 Sep 15;25(18):2298-301. doi: 10.1093/bioinformatics/btp419. Epub 2009 Jul 6. Bioinformatics. 2009. PMID: 19584066

10

Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis.

Nunn A, Otto C, Stadler PF, Langenberger D. Nunn A, et al. Among authors: langenberger d. Brief Bioinform. 2021 Sep 2;22(5):bbab021. doi: 10.1093/bib/bbab021. Brief Bioinform. 2021. PMID: 33624017 Free PMC article.

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