Huttenhower C - Search Results

1

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology.

Börnigen D, Pers TH, Thorrez L, Huttenhower C, Moreau Y, Brunak S. Börnigen D, et al. Among authors: huttenhower c. Nucleic Acids Res. 2013 Oct;41(18):e171. doi: 10.1093/nar/gkt661. Epub 2013 Aug 5. Nucleic Acids Res. 2013. PMID: 23921638 Free PMC article.

2

Functional profiling of the gut microbiome in disease-associated inflammation.

Börnigen D, Morgan XC, Franzosa EA, Ren B, Xavier RJ, Garrett WS, Huttenhower C. Börnigen D, et al. Among authors: huttenhower c. Genome Med. 2013 Jul 31;5(7):65. doi: 10.1186/gm469. eCollection 2013. Genome Med. 2013. PMID: 23906180 Free PMC article. Review.

3

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes.

Segata N, Börnigen D, Morgan XC, Huttenhower C. Segata N, et al. Among authors: huttenhower c. Nat Commun. 2013;4:2304. doi: 10.1038/ncomms3304. Nat Commun. 2013. PMID: 23942190 Free PMC article.

4

A reproducible approach to high-throughput biological data acquisition and integration.

Börnigen D, Moon YS, Rahnavard G, Waldron L, McIver L, Shafquat A, Franzosa EA, Miropolsky L, Sweeney C, Morgan XC, Garrett WS, Huttenhower C. Börnigen D, et al. Among authors: huttenhower c. PeerJ. 2015 Mar 31;3:e791. doi: 10.7717/peerj.791. eCollection 2015. PeerJ. 2015. PMID: 26157642 Free PMC article.

5

Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer.

Börnigen D, Tyekucheva S, Wang X, Rider JR, Lee GS, Mucci LA, Sweeney C, Huttenhower C. Börnigen D, et al. Among authors: huttenhower c. PLoS Comput Biol. 2016 Apr 14;12(4):e1004820. doi: 10.1371/journal.pcbi.1004820. eCollection 2016 Apr. PLoS Comput Biol. 2016. PMID: 27078000 Free PMC article.

6

Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer.

Börnigen D, Ren B, Pickard R, Li J, Ozer E, Hartmann EM, Xiao W, Tickle T, Rider J, Gevers D, Franzosa EA, Davey ME, Gillison ML, Huttenhower C. Börnigen D, et al. Among authors: huttenhower c. Sci Rep. 2017 Dec 15;7(1):17686. doi: 10.1038/s41598-017-17795-z. Sci Rep. 2017. PMID: 29247187 Free PMC article.

7

Low Tristetraprolin Expression Is Associated with Lethal Prostate Cancer.

Gerke T, Beltran H, Wang X, Lee GM, Sboner A, Karnes RJ, Klein EA, Davicioni E, Yousefi K, Ross AE, Börnigen D, Huttenhower C, Mucci LA, Trock BJ, Sweeney CJ. Gerke T, et al. Among authors: huttenhower c. Cancer Epidemiol Biomarkers Prev. 2019 Mar;28(3):584-590. doi: 10.1158/1055-9965.EPI-18-0667. Epub 2018 Nov 12. Cancer Epidemiol Biomarkers Prev. 2019. PMID: 30420441 Free PMC article.

8

A polymorphism in the promoter of FRAS1 is a candidate SNP associated with metastatic prostate cancer.

Wang V, Geybels MS, Jordahl KM, Gerke T, Hamid A, Penney KL, Markt SC, Freedman M, Pomerantz M, Lee GM, Rana H, Börnigen D, Rebbeck TR, Huttenhower C, Eeles RA, Stanford JL, Consortium P, Berndt SI, Claessens F, Sørensen KD, Park JY, Vega A, Usmani N, Mucci L, Sweeney CJ. Wang V, et al. Among authors: huttenhower c. Prostate. 2021 Jul;81(10):683-693. doi: 10.1002/pros.24148. Epub 2021 May 6. Prostate. 2021. PMID: 33956343 Free PMC article.

9

CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types.

Nelms BD, Waldron L, Barrera LA, Weflen AW, Goettel JA, Guo G, Montgomery RK, Neutra MR, Breault DT, Snapper SB, Orkin SH, Bulyk ML, Huttenhower C, Lencer WI. Nelms BD, et al. Among authors: huttenhower c. Genome Biol. 2016 Sep 29;17(1):201. doi: 10.1186/s13059-016-1062-5. Genome Biol. 2016. PMID: 27687735 Free PMC article.

10

Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing.

Sathirapongsasuti JF, Sathira N, Suzuki Y, Huttenhower C, Sugano S. Sathirapongsasuti JF, et al. Among authors: huttenhower c. Nucleic Acids Res. 2011 Mar;39(6):1967-79. doi: 10.1093/nar/gkq949. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062826 Free PMC article.

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