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Profiling microRNA expression in bovine alveolar macrophages using RNA-seq.
Vet Immunol Immunopathol. 2013 Oct 1;155(4):238-44. doi: 10.1016/j.vetimm.2013.08.004. Epub 2013 Aug 24.
Vet Immunol Immunopathol. 2013.
PMID: 24021155
Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection.
Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ.
Lawless N, et al. Among authors: foroushani ab.
PLoS One. 2013;8(3):e57543. doi: 10.1371/journal.pone.0057543. Epub 2013 Mar 5.
PLoS One. 2013.
PMID: 23472090
Free PMC article.
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Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures.
Foroushani AB, Brinkman FS, Lynn DJ.
Foroushani AB, et al.
PeerJ. 2013 Dec 19;1:e229. doi: 10.7717/peerj.229. eCollection 2013 Dec 19.
PeerJ. 2013.
PMID: 24432194
Free PMC article.
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Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications.
Foroushani A, Agrahari R, Docking R, Chang L, Duns G, Hudoba M, Karsan A, Zare H.
Foroushani A, et al.
BMC Med Genomics. 2017 Mar 16;10(1):16. doi: 10.1186/s12920-017-0253-6.
BMC Med Genomics. 2017.
PMID: 28298217
Free PMC article.
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Applications of Bayesian network models in predicting types of hematological malignancies.
Agrahari R, Foroushani A, Docking TR, Chang L, Duns G, Hudoba M, Karsan A, Zare H.
Agrahari R, et al.
Sci Rep. 2018 May 3;8(1):6951. doi: 10.1038/s41598-018-24758-5.
Sci Rep. 2018.
PMID: 29725024
Free PMC article.
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C3HeB/FeJ Mice mimic many aspects of gene expression and pathobiological features of human hepatocellular carcinoma.
Zavadil JA, Herzig MCS, Hildreth K, Foroushani A, Boswell W, Walter R, Reddick R, White H, Zare H, Walter CA.
Zavadil JA, et al.
Mol Carcinog. 2019 Mar;58(3):309-320. doi: 10.1002/mc.22929. Epub 2018 Nov 25.
Mol Carcinog. 2019.
PMID: 30365185
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium; Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J.
Menden MP, et al.
Nat Commun. 2019 Jun 17;10(1):2674. doi: 10.1038/s41467-019-09799-2.
Nat Commun. 2019.
PMID: 31209238
Free PMC article.
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