Buenrostro JD - Search Results

1

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.

Buenrostro JD, Giresi PG, Zaba LC, Chang HY, Greenleaf WJ. Buenrostro JD, et al. Nat Methods. 2013 Dec;10(12):1213-8. doi: 10.1038/nmeth.2688. Epub 2013 Oct 6. Nat Methods. 2013. PMID: 24097267 Free PMC article.

2

Efficient targeted resequencing of human germline and cancer genomes by oligonucleotide-selective sequencing.

Myllykangas S, Buenrostro JD, Natsoulis G, Bell JM, Ji HP. Myllykangas S, et al. Among authors: buenrostro jd. Nat Biotechnol. 2011 Oct 23;29(11):1024-7. doi: 10.1038/nbt.1996. Nat Biotechnol. 2011. PMID: 22020387 Free PMC article.

3

Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries.

Carpenter ML, Buenrostro JD, Valdiosera C, Schroeder H, Allentoft ME, Sikora M, Rasmussen M, Gravel S, Guillén S, Nekhrizov G, Leshtakov K, Dimitrova D, Theodossiev N, Pettener D, Luiselli D, Sandoval K, Moreno-Estrada A, Li Y, Wang J, Gilbert MT, Willerslev E, Greenleaf WJ, Bustamante CD. Carpenter ML, et al. Among authors: buenrostro jd. Am J Hum Genet. 2013 Nov 7;93(5):852-64. doi: 10.1016/j.ajhg.2013.10.002. Epub 2013 Oct 25. Am J Hum Genet. 2013. PMID: 24568772 Free PMC article.

4

Exome sequencing identifies a DNAJB6 mutation in a family with dominantly-inherited limb-girdle muscular dystrophy.

Couthouis J, Raphael AR, Siskind C, Findlay AR, Buenrostro JD, Greenleaf WJ, Vogel H, Day JW, Flanigan KM, Gitler AD. Couthouis J, et al. Among authors: buenrostro jd. Neuromuscul Disord. 2014 May;24(5):431-5. doi: 10.1016/j.nmd.2014.01.014. Epub 2014 Feb 10. Neuromuscul Disord. 2014. PMID: 24594375 Free PMC article.

5

Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes.

Buenrostro JD, Araya CL, Chircus LM, Layton CJ, Chang HY, Snyder MP, Greenleaf WJ. Buenrostro JD, et al. Nat Biotechnol. 2014 Jun;32(6):562-8. doi: 10.1038/nbt.2880. Epub 2014 Apr 13. Nat Biotechnol. 2014. PMID: 24727714 Free PMC article.

6

ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.

Buenrostro JD, Wu B, Chang HY, Greenleaf WJ. Buenrostro JD, et al. Curr Protoc Mol Biol. 2015 Jan 5;109:21.29.1-21.29.9. doi: 10.1002/0471142727.mb2129s109. Curr Protoc Mol Biol. 2015. PMID: 25559105 Free PMC article.

7

Single-cell chromatin accessibility reveals principles of regulatory variation.

Buenrostro JD, Wu B, Litzenburger UM, Ruff D, Gonzales ML, Snyder MP, Chang HY, Greenleaf WJ. Buenrostro JD, et al. Nature. 2015 Jul 23;523(7561):486-90. doi: 10.1038/nature14590. Epub 2015 Jun 17. Nature. 2015. PMID: 26083756 Free PMC article.

8

Transient acquisition of pluripotency during somatic cell transdifferentiation with iPSC reprogramming factors.

Maza I, Caspi I, Zviran A, Chomsky E, Rais Y, Viukov S, Geula S, Buenrostro JD, Weinberger L, Krupalnik V, Hanna S, Zerbib M, Dutton JR, Greenleaf WJ, Massarwa R, Novershtern N, Hanna JH. Maza I, et al. Among authors: buenrostro jd. Nat Biotechnol. 2015 Jul;33(7):769-74. doi: 10.1038/nbt.3270. Epub 2015 Jun 22. Nat Biotechnol. 2015. PMID: 26098448 Free PMC article.

9

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions.

Schep AN, Buenrostro JD, Denny SK, Schwartz K, Sherlock G, Greenleaf WJ. Schep AN, et al. Among authors: buenrostro jd. Genome Res. 2015 Nov;25(11):1757-70. doi: 10.1101/gr.192294.115. Epub 2015 Aug 27. Genome Res. 2015. PMID: 26314830 Free PMC article.

10

Leukemia-Associated Cohesin Mutants Dominantly Enforce Stem Cell Programs and Impair Human Hematopoietic Progenitor Differentiation.

Mazumdar C, Shen Y, Xavy S, Zhao F, Reinisch A, Li R, Corces MR, Flynn RA, Buenrostro JD, Chan SM, Thomas D, Koenig JL, Hong WJ, Chang HY, Majeti R. Mazumdar C, et al. Among authors: buenrostro jd. Cell Stem Cell. 2015 Dec 3;17(6):675-688. doi: 10.1016/j.stem.2015.09.017. Epub 2015 Oct 22. Cell Stem Cell. 2015. PMID: 26607380 Free PMC article.

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