Trapnell C - Search Results

1

The anatomy of successful computational biology software.

Altschul S, Demchak B, Durbin R, Gentleman R, Krzywinski M, Li H, Nekrutenko A, Robinson J, Rasband W, Taylor J, Trapnell C. Altschul S, et al. Among authors: trapnell c. Nat Biotechnol. 2013 Oct;31(10):894-7. doi: 10.1038/nbt.2721. Nat Biotechnol. 2013. PMID: 24104757 Free PMC article. No abstract available.

2

Predicting cellular responses to complex perturbations in high-throughput screens.

Lotfollahi M, Klimovskaia Susmelj A, De Donno C, Hetzel L, Ji Y, Ibarra IL, Srivatsan SR, Naghipourfar M, Daza RM, Martin B, Shendure J, McFaline-Figueroa JL, Boyeau P, Wolf FA, Yakubova N, Günnemann S, Trapnell C, Lopez-Paz D, Theis FJ. Lotfollahi M, et al. Among authors: trapnell c. Mol Syst Biol. 2023 Jun 12;19(6):e11517. doi: 10.15252/msb.202211517. Epub 2023 May 8. Mol Syst Biol. 2023. PMID: 37154091 Free PMC article.

3

High-capacity sample multiplexing for single cell chromatin accessibility profiling.

Booth GT, Daza RM, Srivatsan SR, McFaline-Figueroa JL, Gladden RG, Mullen AC, Furlan SN, Shendure J, Trapnell C. Booth GT, et al. Among authors: trapnell c. BMC Genomics. 2023 Dec 4;24(1):737. doi: 10.1186/s12864-023-09832-1. BMC Genomics. 2023. PMID: 38049719 Free PMC article.

4

Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin.

Aman AJ, Saunders LM, Carr AA, Srivatasan S, Eberhard C, Carrington B, Watkins-Chow D, Pavan WJ, Trapnell C, Parichy DM. Aman AJ, et al. Among authors: trapnell c. Elife. 2023 Sep 11;12:RP86670. doi: 10.7554/eLife.86670. Elife. 2023. PMID: 37695017 Free PMC article.

5

Extreme heterogeneity of influenza virus infection in single cells.

Russell AB, Trapnell C, Bloom JD. Russell AB, et al. Among authors: trapnell c. Elife. 2018 Feb 16;7:e32303. doi: 10.7554/eLife.32303. Elife. 2018. PMID: 29451492 Free PMC article.

6

Airway epithelial interferon response to SARS-CoV-2 is inferior to rhinovirus and heterologous rhinovirus infection suppresses SARS-CoV-2 replication.

Vanderwall ER, Barrow KA, Rich LM, Read DF, Trapnell C, Okoloko O, Ziegler SF, Hallstrand TS, White MP, Debley JS. Vanderwall ER, et al. Among authors: trapnell c. Sci Rep. 2022 Apr 28;12(1):6972. doi: 10.1038/s41598-022-10763-2. Sci Rep. 2022. PMID: 35484173 Free PMC article.

7

Proteostasis governs differential temperature sensitivity across embryonic cell types.

Dorrity MW, Saunders LM, Duran M, Srivatsan SR, Barkan E, Jackson DL, Sattler SM, Ewing B, Queitsch C, Shendure J, Raible DW, Kimelman D, Trapnell C. Dorrity MW, et al. Among authors: trapnell c. Cell. 2023 Nov 9;186(23):5015-5027.e12. doi: 10.1016/j.cell.2023.10.013. Cell. 2023. PMID: 37949057 Free article.

8

Single-cell transcriptomic profiling of the zebrafish inner ear reveals molecularly distinct hair cell and supporting cell subtypes.

Shi T, Beaulieu MO, Saunders LM, Fabian P, Trapnell C, Segil N, Crump JG, Raible DW. Shi T, et al. Among authors: trapnell c. Elife. 2023 Jan 4;12:e82978. doi: 10.7554/eLife.82978. Elife. 2023. PMID: 36598134 Free PMC article.

9

Single-cell sequencing of individual retinal organoids reveals determinants of cell-fate heterogeneity.

Tresenrider A, Sridhar A, Eldred KC, Cuschieri S, Hoffer D, Trapnell C, Reh TA. Tresenrider A, et al. Among authors: trapnell c. Cell Rep Methods. 2023 Aug 9;3(8):100548. doi: 10.1016/j.crmeth.2023.100548. eCollection 2023 Aug 28. Cell Rep Methods. 2023. PMID: 37671011 Free PMC article.

10

How to map billions of short reads onto genomes.

Trapnell C, Salzberg SL. Trapnell C, et al. Nat Biotechnol. 2009 May;27(5):455-7. doi: 10.1038/nbt0509-455. Nat Biotechnol. 2009. PMID: 19430453 Free PMC article.

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