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Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation.
Guo G, Sun X, Chen C, Wu S, Huang P, Li Z, Dean M, Huang Y, Jia W, Zhou Q, Tang A, Yang Z, Li X, Song P, Zhao X, Ye R, Zhang S, Lin Z, Qi M, Wan S, Xie L, Fan F, Nickerson ML, Zou X, Hu X, Xing L, Lv Z, Mei H, Gao S, Liang C, Gao Z, Lu J, Yu Y, Liu C, Li L, Fang X, Jiang Z, Yang J, Li C, Zhao X, Chen J, Zhang F, Lai Y, Lin Z, Zhou F, Chen H, Chan HC, Tsang S, Theodorescu D, Li Y, Zhang X, Wang J, Yang H, Gui Y, Wang J, Cai Z. Guo G, et al. Among authors: dean m. Nat Genet. 2013 Dec;45(12):1459-63. doi: 10.1038/ng.2798. Epub 2013 Oct 13. Nat Genet. 2013. PMID: 24121792 Free PMC article.
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor.
Xu X, Hou Y, Yin X, Bao L, Tang A, Song L, Li F, Tsang S, Wu K, Wu H, He W, Zeng L, Xing M, Wu R, Jiang H, Liu X, Cao D, Guo G, Hu X, Gui Y, Li Z, Xie W, Sun X, Shi M, Cai Z, Wang B, Zhong M, Li J, Lu Z, Gu N, Zhang X, Goodman L, Bolund L, Wang J, Yang H, Kristiansen K, Dean M, Li Y, Wang J. Xu X, et al. Among authors: dean m. Cell. 2012 Mar 2;148(5):886-95. doi: 10.1016/j.cell.2012.02.025. Cell. 2012. PMID: 22385958 Free PMC article.
Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer.
Li Y, Xu X, Song L, Hou Y, Li Z, Tsang S, Li F, Im KM, Wu K, Wu H, Ye X, Li G, Wang L, Zhang B, Liang J, Xie W, Wu R, Jiang H, Liu X, Yu C, Zheng H, Jian M, Nie L, Wan L, Shi M, Sun X, Tang A, Guo G, Gui Y, Cai Z, Li J, Wang W, Lu Z, Zhang X, Bolund L, Kristiansen K, Wang J, Yang H, Dean M, Wang J. Li Y, et al. Among authors: dean m. Gigascience. 2012 Aug 14;1(1):12. doi: 10.1186/2047-217X-1-12. Gigascience. 2012. PMID: 23587365 Free PMC article.
Concurrent alterations in TERT, KDM6A, and the BRCA pathway in bladder cancer.
Nickerson ML, Dancik GM, Im KM, Edwards MG, Turan S, Brown J, Ruiz-Rodriguez C, Owens C, Costello JC, Guo G, Tsang SX, Li Y, Zhou Q, Cai Z, Moore LE, Lucia MS, Dean M, Theodorescu D. Nickerson ML, et al. Among authors: dean m. Clin Cancer Res. 2014 Sep 15;20(18):4935-48. doi: 10.1158/1078-0432.CCR-14-0330. Clin Cancer Res. 2014. PMID: 25225064 Free PMC article.
Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing.
Hou Y, Wu K, Shi X, Li F, Song L, Wu H, Dean M, Li G, Tsang S, Jiang R, Zhang X, Li B, Liu G, Bedekar N, Lu N, Xie G, Liang H, Chang L, Wang T, Chen J, Li Y, Zhang X, Yang H, Xu X, Wang L, Wang J. Hou Y, et al. Among authors: dean m. Gigascience. 2015 Aug 6;4:37. doi: 10.1186/s13742-015-0068-3. eCollection 2015. Gigascience. 2015. PMID: 26251698 Free PMC article.
Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells.
Wu L, Zhang X, Zhao Z, Wang L, Li B, Li G, Dean M, Yu Q, Wang Y, Lin X, Rao W, Mei Z, Li Y, Jiang R, Yang H, Li F, Xie G, Xu L, Wu K, Zhang J, Chen J, Wang T, Kristiansen K, Zhang X, Li Y, Yang H, Wang J, Hou Y, Xu X. Wu L, et al. Among authors: dean m. Gigascience. 2015 Nov 5;4:51. doi: 10.1186/s13742-015-0091-4. eCollection 2015. Gigascience. 2015. PMID: 26550473 Free PMC article.
Evolution of multiple cell clones over a 29-year period of a CLL patient.
Zhao Z, Goldin L, Liu S, Wu L, Zhou W, Lou H, Yu Q, Tsang SX, Jiang M, Li F, McMaster M, Li Y, Lin X, Wang Z, Xu L, Marti G, Li G, Wu K, Yeager M, Yang H, Xu X, Chanock SJ, Li B, Hou Y, Caporaso N, Dean M. Zhao Z, et al. Among authors: dean m. Nat Commun. 2016 Dec 16;7:13765. doi: 10.1038/ncomms13765. Nat Commun. 2016. PMID: 27982015 Free PMC article.
Targeted Deep Sequencing of Bladder Tumors Reveals Novel Associations between Cancer Gene Mutations and Mutational Signatures with Major Risk Factors.
Koutros S, Rao N, Moore LE, Nickerson ML, Lee D, Zhu B, Pardo LA, Baris D, Schwenn M, Johnson A, Jones K, Garcia-Closas M, Prokunina-Olsson L, Silverman DT, Rothman N, Dean M. Koutros S, et al. Among authors: dean m. Clin Cancer Res. 2021 Jul 1;27(13):3725-3733. doi: 10.1158/1078-0432.CCR-20-4419. Epub 2021 Apr 13. Clin Cancer Res. 2021. PMID: 33849962 Free PMC article.
Somatic alterations contributing to metastasis of a castration-resistant prostate cancer.
Nickerson ML, Im KM, Misner KJ, Tan W, Lou H, Gold B, Wells DW, Bravo HC, Fredrikson KM, Harkins TT, Milos P, Zbar B, Linehan WM, Yeager M, Andresson T, Dean M, Bova GS. Nickerson ML, et al. Among authors: dean m. Hum Mutat. 2013 Sep;34(9):1231-41. doi: 10.1002/humu.22346. Epub 2013 Jun 3. Hum Mutat. 2013. PMID: 23636849 Free PMC article.
1,611 results