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A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control.
Bartha I, Carlson JM, Brumme CJ, McLaren PJ, Brumme ZL, John M, Haas DW, Martinez-Picado J, Dalmau J, López-Galíndez C, Casado C, Rauch A, Günthard HF, Bernasconi E, Vernazza P, Klimkait T, Yerly S, O'Brien SJ, Listgarten J, Pfeifer N, Lippert C, Fusi N, Kutalik Z, Allen TM, Müller V, Harrigan PR, Heckerman D, Telenti A, Fellay J. Bartha I, et al. Among authors: listgarten j. Elife. 2013 Oct 29;2:e01123. doi: 10.7554/eLife.01123. Elife. 2013. PMID: 24171102 Free PMC article.
Widespread impact of HLA restriction on immune control and escape pathways of HIV-1.
Carlson JM, Listgarten J, Pfeifer N, Tan V, Kadie C, Walker BD, Ndung'u T, Shapiro R, Frater J, Brumme ZL, Goulder PJ, Heckerman D. Carlson JM, et al. Among authors: listgarten j. J Virol. 2012 May;86(9):5230-43. doi: 10.1128/JVI.06728-11. Epub 2012 Feb 29. J Virol. 2012. PMID: 22379086 Free PMC article.
Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1.
Carlson JM, Brumme CJ, Martin E, Listgarten J, Brockman MA, Le AQ, Chui CK, Cotton LA, Knapp DJ, Riddler SA, Haubrich R, Nelson G, Pfeifer N, Deziel CE, Heckerman D, Apps R, Carrington M, Mallal S, Harrigan PR, John M, Brumme ZL; International HIV Adaptation Collaborative. Carlson JM, et al. Among authors: listgarten j. J Virol. 2012 Dec;86(24):13202-16. doi: 10.1128/JVI.01998-12. Epub 2012 Oct 10. J Virol. 2012. PMID: 23055555 Free PMC article.
FaST linear mixed models for genome-wide association studies.
Lippert C, Listgarten J, Liu Y, Kadie CM, Davidson RI, Heckerman D. Lippert C, et al. Among authors: listgarten j. Nat Methods. 2011 Sep 4;8(10):833-5. doi: 10.1038/nmeth.1681. Nat Methods. 2011. PMID: 21892150
53 results