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Path2Models: large-scale generation of computational models from biochemical pathway maps.
Büchel F, Rodriguez N, Swainston N, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van Iersel M, Keating S, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dräger A, Le Novère N. Büchel F, et al. Among authors: le novere n. BMC Syst Biol. 2013 Nov 1;7:116. doi: 10.1186/1752-0509-7-116. BMC Syst Biol. 2013. PMID: 24180668 Free PMC article.
The systems biology simulation core algorithm.
Keller R, Dörr A, Tabira A, Funahashi A, Ziller MJ, Adams R, Rodriguez N, Le Novère N, Hiroi N, Planatscher H, Zell A, Dräger A. Keller R, et al. Among authors: le novere n. BMC Syst Biol. 2013 Jul 5;7:55. doi: 10.1186/1752-0509-7-55. BMC Syst Biol. 2013. PMID: 23826941 Free PMC article.
BioModels linked dataset.
Wimalaratne SM, Grenon P, Hermjakob H, Le Novère N, Laibe C. Wimalaratne SM, et al. Among authors: le novere n. BMC Syst Biol. 2014 Aug 15;8:91. doi: 10.1186/s12918-014-0091-5. BMC Syst Biol. 2014. PMID: 25182954 Free PMC article.
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
Bergmann FT, Adams R, Moodie S, Cooper J, Glont M, Golebiewski M, Hucka M, Laibe C, Miller AK, Nickerson DP, Olivier BG, Rodriguez N, Sauro HM, Scharm M, Soiland-Reyes S, Waltemath D, Yvon F, Le Novère N. Bergmann FT, et al. Among authors: le novere n. BMC Bioinformatics. 2014 Dec 14;15(1):369. doi: 10.1186/s12859-014-0369-z. BMC Bioinformatics. 2014. PMID: 25494900 Free PMC article.
BioModels: Content, Features, Functionality, and Use.
Juty N, Ali R, Glont M, Keating S, Rodriguez N, Swat MJ, Wimalaratne SM, Hermjakob H, Le Novère N, Laibe C, Chelliah V. Juty N, et al. Among authors: le novere n. CPT Pharmacometrics Syst Pharmacol. 2015 Feb;4(2):e3. doi: 10.1002/psp4.3. Epub 2015 Feb 26. CPT Pharmacometrics Syst Pharmacol. 2015. PMID: 26225232 Free PMC article.
Software that goes with the flow in systems biology.
Hucka M, Le Novère N. Hucka M, et al. Among authors: le novere n. BMC Biol. 2010 Nov 29;8:140. doi: 10.1186/1741-7007-8-140. BMC Biol. 2010. PMID: 21114874 Free PMC article.
154 results