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DDBJ progress report: a new submission system for leading to a correct annotation.
Kosuge T, Mashima J, Kodama Y, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y. Kosuge T, et al. Among authors: mashima j. Nucleic Acids Res. 2014 Jan;42(Database issue):D44-9. doi: 10.1093/nar/gkt1066. Epub 2013 Nov 4. Nucleic Acids Res. 2014. PMID: 24194602 Free PMC article.
Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, Nishikawa T, Hirakawa M, Thierry-Mieg J, Thierry-Mieg D, Ashurst J, Jia L, Nakao M, Thomas MA, Mulder N, Karavidopoulou Y, Jin L, Kim S, Yasuda T, Lenhard B, Eveno E, Suzuki Y, Yamasaki C, Takeda J, Gough C, Hilton P, Fujii Y, Sakai H, Tanaka S, Amid C, Bellgard M, Bonaldo Mde F, Bono H, Bromberg SK, Brookes AJ, Bruford E, Carninci P, Chelala C, Couillault C, de Souza SJ, Debily MA, Devignes MD, Dubchak I, Endo T, Estreicher A, Eyras E, Fukami-Kobayashi K, Gopinath GR, Graudens E, Hahn Y, Han M, Han ZG, Hanada K, Hanaoka H, Harada E, Hashimoto K, Hinz U, Hirai M, Hishiki T, Hopkinson I, Imbeaud S, Inoko H, Kanapin A, Kaneko Y, Kasukawa T, Kelso J, Kersey P, Kikuno R, Kimura K, Korn B, Kuryshev V, Makalowska I, Makino T, Mano S, Mariage-Samson R, Mashima J, Matsuda H, Mewes HW, Minoshima S, Nagai K, Nagasaki H, Nagata N, Nigam R, Ogasawara O, Ohara O, Ohtsubo M, Okada N, Okido T, Oota S, Ota M, Ota T, Otsuki T, Piatier-Tonneau D, Poustka A, Ren SX, Saitou N, Sakai K, Sakamoto S, Sakate R, Schupp I, Servant F, … See abstract for full author list ➔ Imanishi T, et al. Among authors: mashima j. PLoS Biol. 2004 Jun;2(6):e162. doi: 10.1371/journal.pbio.0020162. Epub 2004 Apr 20. PLoS Biol. 2004. PMID: 15103394 Free PMC article.
Exploration and grading of possible genes from 183 bacterial strains by a common protocol to identification of new genes: Gene Trek in Prokaryote Space (GTPS).
Kosuge T, Abe T, Okido T, Tanaka N, Hirahata M, Maruyama Y, Mashima J, Tomiki A, Kurokawa M, Himeno R, Fukuchi S, Miyazaki S, Gojobori T, Tateno Y, Sugawara H. Kosuge T, et al. Among authors: mashima j. DNA Res. 2006 Dec 31;13(6):245-54. doi: 10.1093/dnares/dsl014. Epub 2006 Dec 13. DNA Res. 2006. PMID: 17166861 Free article.
DDBJ progress report.
Kaminuma E, Kosuge T, Kodama Y, Aono H, Mashima J, Gojobori T, Sugawara H, Ogasawara O, Takagi T, Okubo K, Nakamura Y. Kaminuma E, et al. Among authors: mashima j. Nucleic Acids Res. 2011 Jan;39(Database issue):D22-7. doi: 10.1093/nar/gkq1041. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062814 Free PMC article.
DDBJ new system and service refactoring.
Ogasawara O, Mashima J, Kodama Y, Kaminuma E, Nakamura Y, Okubo K, Takagi T. Ogasawara O, et al. Among authors: mashima j. Nucleic Acids Res. 2013 Jan;41(Database issue):D25-9. doi: 10.1093/nar/gks1152. Epub 2012 Nov 24. Nucleic Acids Res. 2013. PMID: 23180790 Free PMC article.
Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records.
Federhen S, Clark K, Barrett T, Parkinson H, Ostell J, Kodama Y, Mashima J, Nakamura Y, Cochrane G, Karsch-Mizrachi I. Federhen S, et al. Among authors: mashima j. Stand Genomic Sci. 2014 Jan 29;9(3):1275-7. doi: 10.4056/sigs.4851102. eCollection 2014 Jun 15. Stand Genomic Sci. 2014. PMID: 25197497 Free PMC article.
The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.
Kodama Y, Mashima J, Kosuge T, Katayama T, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y. Kodama Y, et al. Among authors: mashima j. Nucleic Acids Res. 2015 Jan;43(Database issue):D18-22. doi: 10.1093/nar/gku1120. Epub 2014 Dec 3. Nucleic Acids Res. 2015. PMID: 25477381 Free PMC article.
26 results