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The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network.
PLoS Biol. 2013 Oct;11(10):e1001696. doi: 10.1371/journal.pbio.1001696. Epub 2013 Oct 29.
PLoS Biol. 2013.
PMID: 24204211
Free PMC article.
Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus.
Garfield D, Haygood R, Nielsen WJ, Wray GA.
Garfield D, et al. Among authors: nielsen wj.
Evol Dev. 2012 Mar-Apr;14(2):152-67. doi: 10.1111/j.1525-142X.2012.00532.x.
Evol Dev. 2012.
PMID: 23017024
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Gene expression and adaptive noncoding changes during human evolution.
Babbitt CC, Haygood R, Nielsen WJ, Wray GA.
Babbitt CC, et al. Among authors: nielsen wj.
BMC Genomics. 2017 Jun 5;18(1):435. doi: 10.1186/s12864-017-3831-2.
BMC Genomics. 2017.
PMID: 28583075
Free PMC article.
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Comparative Serum Challenges Show Divergent Patterns of Gene Expression and Open Chromatin in Human and Chimpanzee.
Pizzollo J, Nielsen WJ, Shibata Y, Safi A, Crawford GE, Wray GA, Babbitt CC.
Pizzollo J, et al. Among authors: nielsen wj.
Genome Biol Evol. 2018 Mar 1;10(3):826-839. doi: 10.1093/gbe/evy041.
Genome Biol Evol. 2018.
PMID: 29608722
Free PMC article.
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Comparative expression analysis of the phosphocreatine circuit in extant primates: Implications for human brain evolution.
Pfefferle AD, Warner LR, Wang CW, Nielsen WJ, Babbitt CC, Fedrigo O, Wray GA.
Pfefferle AD, et al. Among authors: nielsen wj.
J Hum Evol. 2011 Feb;60(2):205-212. doi: 10.1016/j.jhevol.2010.10.004. Epub 2010 Dec 28.
J Hum Evol. 2011.
PMID: 21190724
Free PMC article.
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Genetic comparisons yield insight into the evolution of enamel thickness during human evolution.
Horvath JE, Ramachandran GL, Fedrigo O, Nielsen WJ, Babbitt CC, St Clair EM, Pfefferle LW, Jernvall J, Wray GA, Wall CE.
Horvath JE, et al. Among authors: nielsen wj.
J Hum Evol. 2014 Aug;73:75-87. doi: 10.1016/j.jhevol.2014.01.005. Epub 2014 May 5.
J Hum Evol. 2014.
PMID: 24810709
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The phylogeny of extant starfish (Asteroidea: Echinodermata) including Xyloplax, based on comparative transcriptomics.
Linchangco GV Jr, Foltz DW, Reid R, Williams J, Nodzak C, Kerr AM, Miller AK, Hunter R, Wilson NG, Nielsen WJ, Mah CL, Rouse GW, Wray GA, Janies DA.
Linchangco GV Jr, et al. Among authors: nielsen wj.
Mol Phylogenet Evol. 2017 Oct;115:161-170. doi: 10.1016/j.ympev.2017.07.022. Epub 2017 Jul 27.
Mol Phylogenet Evol. 2017.
PMID: 28757447
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Exo-proofreading, a versatile SNP scoring technology.
Cahill P, Bakis M, Hurley J, Kamath V, Nielsen W, Weymouth D, Dupuis J, Doucette-Stamm L, Smith DR.
Cahill P, et al.
Genome Res. 2003 May;13(5):925-31. doi: 10.1101/gr.939903. Epub 2003 Apr 14.
Genome Res. 2003.
PMID: 12695330
Free PMC article.
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