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MicroRNAs and their isomiRs function cooperatively to target common biological pathways.
Cloonan N, Wani S, Xu Q, Gu J, Lea K, Heater S, Barbacioru C, Steptoe AL, Martin HC, Nourbakhsh E, Krishnan K, Gardiner B, Wang X, Nones K, Steen JA, Matigian NA, Wood DL, Kassahn KS, Waddell N, Shepherd J, Lee C, Ichikawa J, McKernan K, Bramlett K, Kuersten S, Grimmond SM. Cloonan N, et al. Among authors: gu j. Genome Biol. 2011 Dec 30;12(12):R126. doi: 10.1186/gb-2011-12-12-r126. Genome Biol. 2011. PMID: 22208850 Free PMC article.
RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.
Sakarya O, Breu H, Radovich M, Chen Y, Wang YN, Barbacioru C, Utiramerur S, Whitley PP, Brockman JP, Vatta P, Zhang Z, Popescu L, Muller MW, Kudlingar V, Garg N, Li CY, Kong BS, Bodeau JP, Nutter RC, Gu J, Bramlett KS, Ichikawa JK, Hyland FC, Siddiqui AS. Sakarya O, et al. Among authors: gu j. PLoS Comput Biol. 2012;8(4):e1002464. doi: 10.1371/journal.pcbi.1002464. Epub 2012 Apr 5. PLoS Comput Biol. 2012. PMID: 22496636 Free PMC article.
Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations.
Tuch BB, Laborde RR, Xu X, Gu J, Chung CB, Monighetti CK, Stanley SJ, Olsen KD, Kasperbauer JL, Moore EJ, Broomer AJ, Tan R, Brzoska PM, Muller MW, Siddiqui AS, Asmann YW, Sun Y, Kuersten S, Barker MA, De La Vega FM, Smith DI. Tuch BB, et al. Among authors: gu j. PLoS One. 2010 Feb 19;5(2):e9317. doi: 10.1371/journal.pone.0009317. PLoS One. 2010. PMID: 20174472 Free PMC article.
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