Denny JC - Search Results

1

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.

Denny JC, Bastarache L, Ritchie MD, Carroll RJ, Zink R, Mosley JD, Field JR, Pulley JM, Ramirez AH, Bowton E, Basford MA, Carrell DS, Peissig PL, Kho AN, Pacheco JA, Rasmussen LV, Crosslin DR, Crane PK, Pathak J, Bielinski SJ, Pendergrass SA, Xu H, Hindorff LA, Li R, Manolio TA, Chute CG, Chisholm RL, Larson EB, Jarvik GP, Brilliant MH, McCarty CA, Kullo IJ, Haines JL, Crawford DC, Masys DR, Roden DM. Denny JC, et al. Nat Biotechnol. 2013 Dec;31(12):1102-10. doi: 10.1038/nbt.2749. Nat Biotechnol. 2013. PMID: 24270849 Free PMC article.

2

Tracking medical students' clinical experiences using natural language processing.

Denny JC, Bastarache L, Sastre EA, Spickard A 3rd. Denny JC, et al. J Biomed Inform. 2009 Oct;42(5):781-9. doi: 10.1016/j.jbi.2009.02.004. Epub 2009 Feb 21. J Biomed Inform. 2009. PMID: 19236956 Free PMC article.

3

PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.

Denny JC, Ritchie MD, Basford MA, Pulley JM, Bastarache L, Brown-Gentry K, Wang D, Masys DR, Roden DM, Crawford DC. Denny JC, et al. Bioinformatics. 2010 May 1;26(9):1205-10. doi: 10.1093/bioinformatics/btq126. Epub 2010 Mar 24. Bioinformatics. 2010. PMID: 20335276 Free PMC article.

4

Development of a natural language processing system to identify timing and status of colonoscopy testing in electronic medical records.

Denny JC, Peterson JF, Choma NN, Xu H, Miller RA, Bastarache L, Peterson NB. Denny JC, et al. AMIA Annu Symp Proc. 2009 Nov 14;2009:141. AMIA Annu Symp Proc. 2009. PMID: 20351837 Free PMC article.

5

Robust replication of genotype-phenotype associations across multiple diseases in an electronic medical record.

Ritchie MD, Denny JC, Crawford DC, Ramirez AH, Weiner JB, Pulley JM, Basford MA, Brown-Gentry K, Balser JR, Masys DR, Haines JL, Roden DM. Ritchie MD, et al. Among authors: denny jc. Am J Hum Genet. 2010 Apr 9;86(4):560-72. doi: 10.1016/j.ajhg.2010.03.003. Epub 2010 Apr 1. Am J Hum Genet. 2010. PMID: 20362271 Free PMC article.

6

Extracting timing and status descriptors for colonoscopy testing from electronic medical records.

Denny JC, Peterson JF, Choma NN, Xu H, Miller RA, Bastarache L, Peterson NB. Denny JC, et al. J Am Med Inform Assoc. 2010 Jul-Aug;17(4):383-8. doi: 10.1136/jamia.2010.004804. J Am Med Inform Assoc. 2010. PMID: 20595304 Free PMC article.

7

An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records.

Schildcrout JS, Basford MA, Pulley JM, Masys DR, Roden DM, Wang D, Chute CG, Kullo IJ, Carrell D, Peissig P, Kho A, Denny JC. Schildcrout JS, et al. Among authors: denny jc. J Biomed Inform. 2010 Dec;43(6):914-23. doi: 10.1016/j.jbi.2010.07.011. Epub 2010 Aug 3. J Biomed Inform. 2010. PMID: 20688191 Free PMC article.

8

Assessing the accuracy of observer-reported ancestry in a biorepository linked to electronic medical records.

Dumitrescu L, Ritchie MD, Brown-Gentry K, Pulley JM, Basford M, Denny JC, Oksenberg JR, Roden DM, Haines JL, Crawford DC. Dumitrescu L, et al. Among authors: denny jc. Genet Med. 2010 Oct;12(10):648-50. doi: 10.1097/GIM.0b013e3181efe2df. Genet Med. 2010. PMID: 20733501 Free PMC article.

9

Integrating existing natural language processing tools for medication extraction from discharge summaries.

Doan S, Bastarache L, Klimkowski S, Denny JC, Xu H. Doan S, et al. Among authors: denny jc. J Am Med Inform Assoc. 2010 Sep-Oct;17(5):528-31. doi: 10.1136/jamia.2010.003855. J Am Med Inform Assoc. 2010. PMID: 20819857 Free PMC article.

10

Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.

Denny JC, Ritchie MD, Crawford DC, Schildcrout JS, Ramirez AH, Pulley JM, Basford MA, Masys DR, Haines JL, Roden DM. Denny JC, et al. Circulation. 2010 Nov 16;122(20):2016-21. doi: 10.1161/CIRCULATIONAHA.110.948828. Epub 2010 Nov 1. Circulation. 2010. PMID: 21041692 Free PMC article.

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