Mungall CJ - Search Results

1

The environment ontology: contextualising biological and biomedical entities.

Buttigieg PL, Morrison N, Smith B, Mungall CJ, Lewis SE; ENVO Consortium. Buttigieg PL, et al. Among authors: mungall cj. J Biomed Semantics. 2013 Dec 11;4(1):43. doi: 10.1186/2041-1480-4-43. J Biomed Semantics. 2013. PMID: 24330602 Free PMC article.

2

Ontologies for biologists: a community model for the annotation of genomic data.

Ashburner M, Mungall CJ, Lewis SE. Ashburner M, et al. Among authors: mungall cj. Cold Spring Harb Symp Quant Biol. 2003;68:227-35. doi: 10.1101/sqb.2003.68.227. Cold Spring Harb Symp Quant Biol. 2003. PMID: 15338622 Review. No abstract available.

3

The Sequence Ontology: a tool for the unification of genome annotations.

Eilbeck K, Lewis SE, Mungall CJ, Yandell M, Stein L, Durbin R, Ashburner M. Eilbeck K, et al. Among authors: mungall cj. Genome Biol. 2005;6(5):R44. doi: 10.1186/gb-2005-6-5-r44. Epub 2005 Apr 29. Genome Biol. 2005. PMID: 15892872 Free PMC article.

4

National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge.

Rubin DL, Lewis SE, Mungall CJ, Misra S, Westerfield M, Ashburner M, Sim I, Chute CG, Solbrig H, Storey MA, Smith B, Day-Richter J, Noy NF, Musen MA. Rubin DL, et al. Among authors: mungall cj. OMICS. 2006 Summer;10(2):185-98. doi: 10.1089/omi.2006.10.185. OMICS. 2006. PMID: 16901225 Review.

5

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ; OBI Consortium; Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S. Smith B, et al. Among authors: mungall cj. Nat Biotechnol. 2007 Nov;25(11):1251-5. doi: 10.1038/nbt1346. Nat Biotechnol. 2007. PMID: 17989687 Free PMC article.

6

The Gene Ontology in 2010: extensions and refinements.

Gene Ontology Consortium. Gene Ontology Consortium. Nucleic Acids Res. 2010 Jan;38(Database issue):D331-5. doi: 10.1093/nar/gkp1018. Epub 2009 Nov 17. Nucleic Acids Res. 2010. PMID: 19920128 Free PMC article.

7

Linking human diseases to animal models using ontology-based phenotype annotation.

Washington NL, Haendel MA, Mungall CJ, Ashburner M, Westerfield M, Lewis SE. Washington NL, et al. Among authors: mungall cj. PLoS Biol. 2009 Nov;7(11):e1000247. doi: 10.1371/journal.pbio.1000247. Epub 2009 Nov 24. PLoS Biol. 2009. PMID: 19956802 Free PMC article.

8

Integrating phenotype ontologies across multiple species.

Mungall CJ, Gkoutos GV, Smith CL, Haendel MA, Lewis SE, Ashburner M. Mungall CJ, et al. Genome Biol. 2010 Jan 8;11(1):R2. doi: 10.1186/gb-2010-11-1-r2. Genome Biol. 2010. PMID: 20064205 Free PMC article.

9

Uberon, an integrative multi-species anatomy ontology.

Mungall CJ, Torniai C, Gkoutos GV, Lewis SE, Haendel MA. Mungall CJ, et al. Genome Biol. 2012 Jan 31;13(1):R5. doi: 10.1186/gb-2012-13-1-r5. Genome Biol. 2012. PMID: 22293552 Free PMC article.

10

On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.

Thomas PD, Wood V, Mungall CJ, Lewis SE, Blake JA; Gene Ontology Consortium. Thomas PD, et al. Among authors: mungall cj. PLoS Comput Biol. 2012;8(2):e1002386. doi: 10.1371/journal.pcbi.1002386. Epub 2012 Feb 16. PLoS Comput Biol. 2012. PMID: 22359495 Free PMC article.

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