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The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.
GIGA Community of Scientists; Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X. GIGA Community of Scientists, et al. Among authors: oakley t. J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084. J Hered. 2014. PMID: 24336862 Free PMC article.
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Speiser DI, et al. BMC Bioinformatics. 2014 Nov 19;15(1):350. doi: 10.1186/s12859-014-0350-x. BMC Bioinformatics. 2014. PMID: 25407802 Free PMC article.
Different phylogenomic methods support monophyly of enigmatic 'Mesozoa' (Dicyemida + Orthonectida, Lophotrochozoa).
Drábková M, Kocot KM, Halanych KM, Oakley TH, Moroz LL, Cannon JT, Kuris A, Garcia-Vedrenne AE, Pankey MS, Ellis EA, Varney R, Štefka J, Zrzavý J. Drábková M, et al. Among authors: oakley th. Proc Biol Sci. 2022 Jul 13;289(1978):20220683. doi: 10.1098/rspb.2022.0683. Epub 2022 Jul 6. Proc Biol Sci. 2022. PMID: 35858055 Free PMC article.
A post-synaptic scaffold at the origin of the animal kingdom.
Sakarya O, Armstrong KA, Adamska M, Adamski M, Wang IF, Tidor B, Degnan BM, Oakley TH, Kosik KS. Sakarya O, et al. PLoS One. 2007 Jun 6;2(6):e506. doi: 10.1371/journal.pone.0000506. PLoS One. 2007. PMID: 17551586 Free PMC article.
The Amphimedon queenslandica genome and the evolution of animal complexity.
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, Degnan SM, Oakley TH, Plachetzki DC, Zhai Y, Adamski M, Calcino A, Cummins SF, Goodstein DM, Harris C, Jackson DJ, Leys SP, Shu S, Woodcroft BJ, Vervoort M, Kosik KS, Manning G, Degnan BM, Rokhsar DS. Srivastava M, et al. Among authors: oakley th. Nature. 2010 Aug 5;466(7307):720-6. doi: 10.1038/nature09201. Nature. 2010. PMID: 20686567 Free PMC article.
131 results