Ferguson JF - Search Results

1

PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution.

Hu Y, Liu Y, Mao X, Jia C, Ferguson JF, Xue C, Reilly MP, Li H, Li M. Hu Y, et al. Among authors: ferguson jf. Nucleic Acids Res. 2014 Feb;42(3):e20. doi: 10.1093/nar/gkt1304. Epub 2013 Dec 20. Nucleic Acids Res. 2014. PMID: 24362841 Free PMC article.

2

Evaluating the impact of sequencing depth on transcriptome profiling in human adipose.

Liu Y, Ferguson JF, Xue C, Silverman IM, Gregory B, Reilly MP, Li M. Liu Y, et al. Among authors: ferguson jf. PLoS One. 2013 Jun 24;8(6):e66883. doi: 10.1371/journal.pone.0066883. Print 2013. PLoS One. 2013. PMID: 23826166 Free PMC article.

3

Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases.

Liu Y, Ferguson JF, Xue C, Ballantyne RL, Silverman IM, Gosai SJ, Serfecz J, Morley MP, Gregory BD, Li M, Reilly MP. Liu Y, et al. Among authors: ferguson jf. Arterioscler Thromb Vasc Biol. 2014 Apr;34(4):902-12. doi: 10.1161/ATVBAHA.113.303123. Epub 2014 Feb 6. Arterioscler Thromb Vasc Biol. 2014. PMID: 24504737 Free PMC article.

4

Adipose tissue RNASeq reveals novel gene-nutrient interactions following n-3 PUFA supplementation and evoked inflammation in humans.

Ferguson JF, Xue C, Hu Y, Li M, Reilly MP. Ferguson JF, et al. J Nutr Biochem. 2016 Apr;30:126-32. doi: 10.1016/j.jnutbio.2015.12.010. Epub 2016 Jan 11. J Nutr Biochem. 2016. PMID: 27012629 Free PMC article.

5

Expression of Calgranulin Genes S100A8, S100A9 and S100A12 Is Modulated by n-3 PUFA during Inflammation in Adipose Tissue and Mononuclear Cells.

Shah RD, Xue C, Zhang H, Tuteja S, Li M, Reilly MP, Ferguson JF. Shah RD, et al. Among authors: ferguson jf. PLoS One. 2017 Jan 26;12(1):e0169614. doi: 10.1371/journal.pone.0169614. eCollection 2017. PLoS One. 2017. PMID: 28125622 Free PMC article. Clinical Trial.

6

De novo RNA sequence assembly during in vivo inflammatory stress reveals hundreds of unannotated lincRNAs in human blood CD14⁺ monocytes and in adipose tissue.

Xue C, Zhang X, Zhang H, Ferguson JF, Wang Y, Hinkle CC, Li M, Reilly MP. Xue C, et al. Among authors: ferguson jf. Physiol Genomics. 2017 Jun 1;49(6):287-305. doi: 10.1152/physiolgenomics.00001.2017. Epub 2017 Apr 7. Physiol Genomics. 2017. PMID: 28389524 Free PMC article.

7

Tissue-Specific Differential Expression of Novel Genes and Long Intergenic Noncoding RNAs in Humans With Extreme Response to Evoked Endotoxemia.

Ferguson JF, Xue C, Gao Y, Tian T, Shi J, Zhang X, Wang Y, Li YD, Wei Z, Li M, Zhang H, Reilly MP. Ferguson JF, et al. Circ Genom Precis Med. 2018 Nov;11(11):e001907. doi: 10.1161/CIRCGEN.117.001907. Circ Genom Precis Med. 2018. PMID: 30571184 Free PMC article. Clinical Trial.

8

Integrative genomics identifies 7p11.2 as a novel locus for fever and clinical stress response in humans.

Ferguson JF, Meyer NJ, Qu L, Xue C, Liu Y, DerOhannessian SL, Rushefski M, Paschos GK, Tang S, Schadt EE, Li M, Christie JD, Reilly MP. Ferguson JF, et al. Hum Mol Genet. 2015 Mar 15;24(6):1801-12. doi: 10.1093/hmg/ddu589. Epub 2014 Nov 20. Hum Mol Genet. 2015. PMID: 25416278 Free PMC article.

9

Interrogation of nonconserved human adipose lincRNAs identifies a regulatory role of linc-ADAL in adipocyte metabolism.

Zhang X, Xue C, Lin J, Ferguson JF, Weiner A, Liu W, Han Y, Hinkle C, Li W, Jiang H, Gosai S, Hachet M, Garcia BA, Gregory BD, Soccio RE, Hogenesch JB, Seale P, Li M, Reilly MP. Zhang X, et al. Among authors: ferguson jf. Sci Transl Med. 2018 Jun 20;10(446):eaar5987. doi: 10.1126/scitranslmed.aar5987. Sci Transl Med. 2018. PMID: 29925637 Free PMC article.

10

Human experimental endotoxemia in modeling the pathophysiology, genomics, and therapeutics of innate immunity in complex cardiometabolic diseases.

Patel PN, Shah RY, Ferguson JF, Reilly MP. Patel PN, et al. Among authors: ferguson jf. Arterioscler Thromb Vasc Biol. 2015 Mar;35(3):525-34. doi: 10.1161/ATVBAHA.114.304455. Epub 2014 Dec 30. Arterioscler Thromb Vasc Biol. 2015. PMID: 25550206 Free PMC article. Review.

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