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Dynamic simulation of regulatory networks using SQUAD.
Di Cara A, Garg A, De Micheli G, Xenarios I, Mendoza L. Di Cara A, et al. Among authors: garg a. BMC Bioinformatics. 2007 Nov 26;8:462. doi: 10.1186/1471-2105-8-462. BMC Bioinformatics. 2007. PMID: 18039375 Free PMC article.
Synchronous versus asynchronous modeling of gene regulatory networks.
Garg A, Di Cara A, Xenarios I, Mendoza L, De Micheli G. Garg A, et al. Bioinformatics. 2008 Sep 1;24(17):1917-25. doi: 10.1093/bioinformatics/btn336. Epub 2008 Jul 9. Bioinformatics. 2008. PMID: 18614585 Free PMC article.
The two dynamical properties that are often experimentally testable are perturbations and stable steady states. Although a lot of work has been done on the identification of steady states, not much work has been reported on in silico modeling of cellular differentiation pr …
The two dynamical properties that are often experimentally testable are perturbations and stable steady states. Although a lot of wor …
Modeling stochasticity and robustness in gene regulatory networks.
Garg A, Mohanram K, Di Cara A, De Micheli G, Xenarios I. Garg A, et al. Bioinformatics. 2009 Jun 15;25(12):i101-9. doi: 10.1093/bioinformatics/btp214. Bioinformatics. 2009. PMID: 19477975 Free PMC article.
MOTIVATION: Understanding gene regulation in biological processes and modeling the robustness of underlying regulatory networks is an important problem that is currently being addressed by computational systems biologists. Lately, there has been a renewed interest in Boole …
MOTIVATION: Understanding gene regulation in biological processes and modeling the robustness of underlying regulatory networks is an import …
Modeling of multiple valued gene regulatory networks.
Garg A, Mendoza L, Xenarios I, DeMicheli G. Garg A, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2007;2007:1398-404. doi: 10.1109/IEMBS.2007.4352560. Annu Int Conf IEEE Eng Med Biol Soc. 2007. PMID: 18002226
Angiogenic activity of breast cancer patients' monocytes reverted by combined use of systems modeling and experimental approaches.
Guex N, Crespo I, Bron S, Ifticene-Treboux A, Faes-Van't Hull E, Kharoubi S, Liechti R, Werffeli P, Ibberson M, Majo F, Nicolas M, Laurent J, Garg A, Zaman K, Lehr HA, Stevenson BJ, Rüegg C, Coukos G, Delaloye JF, Xenarios I, Doucey MA. Guex N, et al. Among authors: garg a. PLoS Comput Biol. 2015 Mar 13;11(3):e1004050. doi: 10.1371/journal.pcbi.1004050. eCollection 2015 Mar. PLoS Comput Biol. 2015. PMID: 25768678 Free PMC article.
4,267 results