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Toolboxes for a standardised and systematic study of glycans.
Campbell MP, Ranzinger R, Lütteke T, Mariethoz J, Hayes CA, Zhang J, Akune Y, Aoki-Kinoshita KF, Damerell D, Carta G, York WS, Haslam SM, Narimatsu H, Rudd PM, Karlsson NG, Packer NH, Lisacek F. Campbell MP, et al. Among authors: mariethoz j. BMC Bioinformatics. 2014;15 Suppl 1(Suppl 1):S9. doi: 10.1186/1471-2105-15-S1-S9. Epub 2014 Jan 10. BMC Bioinformatics. 2014. PMID: 24564482 Free PMC article.
An Interactive View of Glycosylation.
Mariethoz J, Alocci D, Karlsson NG, Packer NH, Lisacek F. Mariethoz J, et al. Methods Mol Biol. 2022;2370:41-65. doi: 10.1007/978-1-0716-1685-7_3. Methods Mol Biol. 2022. PMID: 34611864
UniCarbKB: building a knowledge platform for glycoproteomics.
Campbell MP, Peterson R, Mariethoz J, Gasteiger E, Akune Y, Aoki-Kinoshita KF, Lisacek F, Packer NH. Campbell MP, et al. Among authors: mariethoz j. Nucleic Acids Res. 2014 Jan;42(Database issue):D215-21. doi: 10.1093/nar/gkt1128. Epub 2013 Nov 13. Nucleic Acids Res. 2014. PMID: 24234447 Free PMC article.
Databases and Associated Tools for Glycomics and Glycoproteomics.
Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG. Lisacek F, et al. Among authors: mariethoz j. Methods Mol Biol. 2017;1503:235-264. doi: 10.1007/978-1-4939-6493-2_18. Methods Mol Biol. 2017. PMID: 27743371
Towards a standardized bioinformatics infrastructure for N- and O-glycomics.
Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, Levander F, Kolarich D, Rudd PM, Wuhrer M, Kettner C, Packer NH, Aoki-Kinoshita KF, Lisacek F, Karlsson NG. Rojas-Macias MA, et al. Among authors: mariethoz j. Nat Commun. 2019 Jul 22;10(1):3275. doi: 10.1038/s41467-019-11131-x. Nat Commun. 2019. PMID: 31332201 Free PMC article. Review.
Glycomics@ExPASy: Bridging the Gap.
Mariethoz J, Alocci D, Gastaldello A, Horlacher O, Gasteiger E, Rojas-Macias M, Karlsson NG, Packer NH, Lisacek F. Mariethoz J, et al. Mol Cell Proteomics. 2018 Nov;17(11):2164-2176. doi: 10.1074/mcp.RA118.000799. Epub 2018 Aug 10. Mol Cell Proteomics. 2018. PMID: 30097532 Free PMC article.
Dealing with the Ambiguity of Glycan Substructure Search.
Daponte V, Hayes C, Mariethoz J, Lisacek F. Daponte V, et al. Among authors: mariethoz j. Molecules. 2021 Dec 23;27(1):65. doi: 10.3390/molecules27010065. Molecules. 2021. PMID: 35011294 Free PMC article.
GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.
Alocci D, Mariethoz J, Gastaldello A, Gasteiger E, Karlsson NG, Kolarich D, Packer NH, Lisacek F. Alocci D, et al. Among authors: mariethoz j. J Proteome Res. 2019 Feb 1;18(2):664-677. doi: 10.1021/acs.jproteome.8b00766. Epub 2019 Jan 15. J Proteome Res. 2019. PMID: 30574787
SugarBindDB, a resource of glycan-mediated host-pathogen interactions.
Mariethoz J, Khatib K, Alocci D, Campbell MP, Karlsson NG, Packer NH, Mullen EH, Lisacek F. Mariethoz J, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D1243-50. doi: 10.1093/nar/gkv1247. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26578555 Free PMC article.
31 results