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Toolboxes for a standardised and systematic study of glycans.
Campbell MP, Ranzinger R, Lütteke T, Mariethoz J, Hayes CA, Zhang J, Akune Y, Aoki-Kinoshita KF, Damerell D, Carta G, York WS, Haslam SM, Narimatsu H, Rudd PM, Karlsson NG, Packer NH, Lisacek F. Campbell MP, et al. Among authors: packer nh. BMC Bioinformatics. 2014;15 Suppl 1(Suppl 1):S9. doi: 10.1186/1471-2105-15-S1-S9. Epub 2014 Jan 10. BMC Bioinformatics. 2014. PMID: 24564482 Free PMC article.
UniCarb-DB: a database resource for glycomic discovery.
Hayes CA, Karlsson NG, Struwe WB, Lisacek F, Rudd PM, Packer NH, Campbell MP. Hayes CA, et al. Among authors: packer nh. Bioinformatics. 2011 May 1;27(9):1343-4. doi: 10.1093/bioinformatics/btr137. Epub 2011 Mar 12. Bioinformatics. 2011. PMID: 21398669
An Interactive View of Glycosylation.
Mariethoz J, Alocci D, Karlsson NG, Packer NH, Lisacek F. Mariethoz J, et al. Among authors: packer nh. Methods Mol Biol. 2022;2370:41-65. doi: 10.1007/978-1-0716-1685-7_3. Methods Mol Biol. 2022. PMID: 34611864
UniCarbKB: putting the pieces together for glycomics research.
Campbell MP, Hayes CA, Struwe WB, Wilkins MR, Aoki-Kinoshita KF, Harvey DJ, Rudd PM, Kolarich D, Lisacek F, Karlsson NG, Packer NH. Campbell MP, et al. Among authors: packer nh. Proteomics. 2011 Nov;11(21):4117-21. doi: 10.1002/pmic.201100302. Epub 2011 Sep 19. Proteomics. 2011. PMID: 21898825
MIRAGE: the minimum information required for a glycomics experiment.
York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo KH, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, Kettner C. York WS, et al. Among authors: packer nh. Glycobiology. 2014 May;24(5):402-6. doi: 10.1093/glycob/cwu018. Epub 2014 Mar 20. Glycobiology. 2014. PMID: 24653214 Free PMC article.
Databases and Associated Tools for Glycomics and Glycoproteomics.
Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG. Lisacek F, et al. Among authors: packer nh. Methods Mol Biol. 2017;1503:235-264. doi: 10.1007/978-1-4939-6493-2_18. Methods Mol Biol. 2017. PMID: 27743371
Towards a standardized bioinformatics infrastructure for N- and O-glycomics.
Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, Levander F, Kolarich D, Rudd PM, Wuhrer M, Kettner C, Packer NH, Aoki-Kinoshita KF, Lisacek F, Karlsson NG. Rojas-Macias MA, et al. Among authors: packer nh. Nat Commun. 2019 Jul 22;10(1):3275. doi: 10.1038/s41467-019-11131-x. Nat Commun. 2019. PMID: 31332201 Free PMC article. Review.
GlyTouCan: an accessible glycan structure repository.
Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, Pierce M, Ranzinger R, Narimatsu H, Aoki-Kinoshita KF. Tiemeyer M, et al. Among authors: packer nh. Glycobiology. 2017 Oct 1;27(10):915-919. doi: 10.1093/glycob/cwx066. Glycobiology. 2017. PMID: 28922742 Free PMC article.
UniCarbKB: building a knowledge platform for glycoproteomics.
Campbell MP, Peterson R, Mariethoz J, Gasteiger E, Akune Y, Aoki-Kinoshita KF, Lisacek F, Packer NH. Campbell MP, et al. Among authors: packer nh. Nucleic Acids Res. 2014 Jan;42(Database issue):D215-21. doi: 10.1093/nar/gkt1128. Epub 2013 Nov 13. Nucleic Acids Res. 2014. PMID: 24234447 Free PMC article.
302 results