Schapiro D - Search Results

1

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry.

Giesen C, Wang HA, Schapiro D, Zivanovic N, Jacobs A, Hattendorf B, Schüffler PJ, Grolimund D, Buhmann JM, Brandt S, Varga Z, Wild PJ, Günther D, Bodenmiller B. Giesen C, et al. Among authors: schapiro d. Nat Methods. 2014 Apr;11(4):417-22. doi: 10.1038/nmeth.2869. Epub 2014 Mar 2. Nat Methods. 2014. PMID: 24584193

2

Automatic single cell segmentation on highly multiplexed tissue images.

Schüffler PJ, Schapiro D, Giesen C, Wang HA, Bodenmiller B, Buhmann JM. Schüffler PJ, et al. Among authors: schapiro d. Cytometry A. 2015 Oct;87(10):936-42. doi: 10.1002/cyto.a.22702. Epub 2015 Jul 2. Cytometry A. 2015. PMID: 26147066 Free article.

3

Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry.

Lun XK, Zanotelli VR, Wade JD, Schapiro D, Tognetti M, Dobberstein N, Bodenmiller B. Lun XK, et al. Among authors: schapiro d. Nat Biotechnol. 2017 Feb;35(2):164-172. doi: 10.1038/nbt.3770. Epub 2017 Jan 16. Nat Biotechnol. 2017. PMID: 28092656 Free PMC article.

4

histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data.

Schapiro D, Jackson HW, Raghuraman S, Fischer JR, Zanotelli VRT, Schulz D, Giesen C, Catena R, Varga Z, Bodenmiller B. Schapiro D, et al. Nat Methods. 2017 Sep;14(9):873-876. doi: 10.1038/nmeth.4391. Epub 2017 Aug 7. Nat Methods. 2017. PMID: 28783155 Free PMC article.

5

Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry.

Schulz D, Zanotelli VRT, Fischer JR, Schapiro D, Engler S, Lun XK, Jackson HW, Bodenmiller B. Schulz D, et al. Among authors: schapiro d. Cell Syst. 2018 Jan 24;6(1):25-36.e5. doi: 10.1016/j.cels.2017.12.001. Epub 2017 Dec 27. Cell Syst. 2018. PMID: 29289569 Free PMC article.

6

High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.

Pelissier Vatter FA, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB. Pelissier Vatter FA, et al. Among authors: schapiro d. Cell Rep. 2018 Apr 24;23(4):1205-1219. doi: 10.1016/j.celrep.2018.03.114. Cell Rep. 2018. PMID: 29694896 Free PMC article.

7

Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry.

Schulz D, Zanotelli VRT, Fischer JR, Schapiro D, Engler S, Lun XK, Jackson HW, Bodenmiller B. Schulz D, et al. Among authors: schapiro d. Cell Syst. 2018 Apr 25;6(4):531. doi: 10.1016/j.cels.2018.04.004. Cell Syst. 2018. PMID: 29698648 Free PMC article. No abstract available.

8

A Map of Human Type 1 Diabetes Progression by Imaging Mass Cytometry.

Damond N, Engler S, Zanotelli VRT, Schapiro D, Wasserfall CH, Kusmartseva I, Nick HS, Thorel F, Herrera PL, Atkinson MA, Bodenmiller B. Damond N, et al. Among authors: schapiro d. Cell Metab. 2019 Mar 5;29(3):755-768.e5. doi: 10.1016/j.cmet.2018.11.014. Epub 2019 Jan 31. Cell Metab. 2019. PMID: 30713109 Free PMC article.

9

High-definition spatial transcriptomics for in situ tissue profiling.

Vickovic S, Eraslan G, Salmén F, Klughammer J, Stenbeck L, Schapiro D, Äijö T, Bonneau R, Bergenstråhle L, Navarro JF, Gould J, Griffin GK, Borg Å, Ronaghi M, Frisén J, Lundeberg J, Regev A, Ståhl PL. Vickovic S, et al. Among authors: schapiro d. Nat Methods. 2019 Oct;16(10):987-990. doi: 10.1038/s41592-019-0548-y. Epub 2019 Sep 9. Nat Methods. 2019. PMID: 31501547 Free PMC article.

10

Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis.

Arnol D, Schapiro D, Bodenmiller B, Saez-Rodriguez J, Stegle O. Arnol D, et al. Among authors: schapiro d. Cell Rep. 2019 Oct 1;29(1):202-211.e6. doi: 10.1016/j.celrep.2019.08.077. Cell Rep. 2019. PMID: 31577949 Free PMC article.

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