Thakar J - Search Results

1

Immune markers associated with host susceptibility to infection with West Nile virus.

Qian F, Thakar J, Yuan X, Nolan M, Murray KO, Lee WT, Wong SJ, Meng H, Fikrig E, Kleinstein SH, Montgomery RR. Qian F, et al. Among authors: thakar j. Viral Immunol. 2014 Mar;27(2):39-47. doi: 10.1089/vim.2013.0074. Viral Immunol. 2014. PMID: 24605787 Free PMC article.

2

Aging-dependent alterations in gene expression and a mitochondrial signature of responsiveness to human influenza vaccination.

Thakar J, Mohanty S, West AP, Joshi SR, Ueda I, Wilson J, Meng H, Blevins TP, Tsang S, Trentalange M, Siconolfi B, Park K, Gill TM, Belshe RB, Kaech SM, Shadel GS, Kleinstein SH, Shaw AC. Thakar J, et al. Aging (Albany NY). 2015 Jan;7(1):38-52. doi: 10.18632/aging.100720. Aging (Albany NY). 2015. PMID: 25596819 Free PMC article.

3

Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism.

Thakar J, Hartmann BM, Marjanovic N, Sealfon SC, Kleinstein SH. Thakar J, et al. BMC Immunol. 2015 Aug 14;16:46. doi: 10.1186/s12865-015-0107-y. BMC Immunol. 2015. PMID: 26272204 Free PMC article.

4

Overcoming NS1-mediated immune antagonism involves both interferon-dependent and independent mechanisms.

Thakar J, Schmid S, Duke JL, García-Sastre A, Kleinstein SH. Thakar J, et al. J Interferon Cytokine Res. 2013 Nov;33(11):700-8. doi: 10.1089/jir.2012.0113. Epub 2013 Jun 17. J Interferon Cytokine Res. 2013. PMID: 23772952 Free PMC article.

5

Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations.

Yaari G, Bolen CR, Thakar J, Kleinstein SH. Yaari G, et al. Among authors: thakar j. Nucleic Acids Res. 2013 Oct;41(18):e170. doi: 10.1093/nar/gkt660. Epub 2013 Aug 5. Nucleic Acids Res. 2013. PMID: 23921631 Free PMC article.

6

Human Dendritic Cell Response Signatures Distinguish 1918, Pandemic, and Seasonal H1N1 Influenza Viruses.

Hartmann BM, Thakar J, Albrecht RA, Avey S, Zaslavsky E, Marjanovic N, Chikina M, Fribourg M, Hayot F, Schmolke M, Meng H, Wetmur J, García-Sastre A, Kleinstein SH, Sealfon SC. Hartmann BM, et al. Among authors: thakar j. J Virol. 2015 Oct;89(20):10190-205. doi: 10.1128/JVI.01523-15. Epub 2015 Jul 29. J Virol. 2015. PMID: 26223639 Free PMC article.

7

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection.

Zaslavsky E, Nudelman G, Marquez S, Hershberg U, Hartmann BM, Thakar J, Sealfon SC, Kleinstein SH. Zaslavsky E, et al. Among authors: thakar j. BMC Bioinformatics. 2013;14 Suppl 6(Suppl 6):S1. doi: 10.1186/1471-2105-14-S6-S1. Epub 2013 Apr 17. BMC Bioinformatics. 2013. PMID: 23734902 Free PMC article.

8

Meta-analysis of cell- specific transcriptomic data using fuzzy c-means clustering discovers versatile viral responsive genes.

Khan A, Katanic D, Thakar J. Khan A, et al. Among authors: thakar j. BMC Bioinformatics. 2017 Jun 6;18(1):295. doi: 10.1186/s12859-017-1669-x. BMC Bioinformatics. 2017. PMID: 28587632 Free PMC article.

9

FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis.

Zhang Y, Topham DJ, Thakar J, Qiu X. Zhang Y, et al. Among authors: thakar j. Bioinformatics. 2017 Jul 1;33(13):1944-1952. doi: 10.1093/bioinformatics/btx104. Bioinformatics. 2017. PMID: 28334094 Free PMC article.

10

Diversity in Compartmental Dynamics of Gene Regulatory Networks: The Immune Response in Primary Influenza A Infection in Mice.

Qiu X, Wu S, Hilchey SP, Thakar J, Liu ZP, Welle SL, Henn AD, Wu H, Zand MS. Qiu X, et al. Among authors: thakar j. PLoS One. 2015 Sep 28;10(9):e0138110. doi: 10.1371/journal.pone.0138110. eCollection 2015. PLoS One. 2015. PMID: 26413862 Free PMC article.

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