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WeFold: a coopetition for protein structure prediction.
Proteins. 2014 Sep;82(9):1850-68. doi: 10.1002/prot.24538. Epub 2014 Jul 8.
Proteins. 2014.
PMID: 24677212
Free PMC article.
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.
Keasar C, McGuffin LJ, Wallner B, Chopra G, Adhikari B, Bhattacharya D, Blake L, Bortot LO, Cao R, Dhanasekaran BK, Dimas I, Faccioli RA, Faraggi E, Ganzynkowicz R, Ghosh S, Ghosh S, Giełdoń A, Golon L, He Y, Heo L, Hou J, Khan M, Khatib F, Khoury GA, Kieslich C, Kim DE, Krupa P, Lee GR, Li H, Li J, Lipska A, Liwo A, Maghrabi AHA, Mirdita M, Mirzaei S, Mozolewska MA, Onel M, Ovchinnikov S, Shah A, Shah U, Sidi T, Sieradzan AK, Ślusarz M, Ślusarz R, Smadbeck J, Tamamis P, Trieber N, Wirecki T, Yin Y, Zhang Y, Bacardit J, Baranowski M, Chapman N, Cooper S, Defelicibus A, Flatten J, Koepnick B, Popović Z, Zaborowski B, Baker D, Cheng J, Czaplewski C, Delbem ACB, Floudas C, Kloczkowski A, Ołdziej S, Levitt M, Scheraga H, Seok C, Söding J, Vishveshwara S, Xu D; Foldit Players consortium; Crivelli SN.
Keasar C, et al. Among authors: flatten j.
Sci Rep. 2018 Jul 2;8(1):9939. doi: 10.1038/s41598-018-26812-8.
Sci Rep. 2018.
PMID: 29967418
Free PMC article.
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Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta.
Kleffner R, Flatten J, Leaver-Fay A, Baker D, Siegel JB, Khatib F, Cooper S.
Kleffner R, et al. Among authors: flatten j.
Bioinformatics. 2017 Sep 1;33(17):2765-2767. doi: 10.1093/bioinformatics/btx283.
Bioinformatics. 2017.
PMID: 28481970
Free PMC article.
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Determining crystal structures through crowdsourcing and coursework.
Horowitz S, Koepnick B, Martin R, Tymieniecki A, Winburn AA, Cooper S, Flatten J, Rogawski DS, Koropatkin NM, Hailu TT, Jain N, Koldewey P, Ahlstrom LS, Chapman MR, Sikkema AP, Skiba MA, Maloney FP, Beinlich FR; Foldit Players; University of Michigan students; Popović Z, Baker D, Khatib F, Bardwell JC.
Horowitz S, et al. Among authors: flatten j.
Nat Commun. 2016 Sep 16;7:12549. doi: 10.1038/ncomms12549.
Nat Commun. 2016.
PMID: 27633552
Free PMC article.
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Building de novo cryo-electron microscopy structures collaboratively with citizen scientists.
Khatib F, Desfosses A; Foldit Players; Koepnick B, Flatten J, Popović Z, Baker D, Cooper S, Gutsche I, Horowitz S.
Khatib F, et al. Among authors: flatten j.
PLoS Biol. 2019 Nov 12;17(11):e3000472. doi: 10.1371/journal.pbio.3000472. eCollection 2019 Nov.
PLoS Biol. 2019.
PMID: 31714936
Free PMC article.
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De novo protein design by citizen scientists.
Koepnick B, Flatten J, Husain T, Ford A, Silva DA, Bick MJ, Bauer A, Liu G, Ishida Y, Boykov A, Estep RD, Kleinfelter S, Nørgård-Solano T, Wei L, Players F, Montelione GT, DiMaio F, Popović Z, Khatib F, Cooper S, Baker D.
Koepnick B, et al. Among authors: flatten j.
Nature. 2019 Jun;570(7761):390-394. doi: 10.1038/s41586-019-1274-4. Epub 2019 Jun 5.
Nature. 2019.
PMID: 31168091
Free PMC article.
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Corrigendum: Determining crystal structures through crowdsourcing and coursework.
Horowitz S, Koepnick B, Martin R, Tymieniecki A, Winburn AA, Cooper S, Flatten J, Rogawski DS, Koropatkin NM, Hailu TT, Jain N, Koldewey P, Ahlstrom LS, Chapman MR, Sikkema AP, Skiba MA, Maloney FP, Beinlich FR; Foldit Players; University of Michigan students; Popović Z, Baker D, Khatib F, Bardwell JC.
Horowitz S, et al. Among authors: flatten j.
Nat Commun. 2016 Oct 25;7:13392. doi: 10.1038/ncomms13392.
Nat Commun. 2016.
PMID: 27779204
Free PMC article.
No abstract available.
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Creating custom Foldit puzzles for teaching biochemistry.
Dsilva L, Mittal S, Koepnick B, Flatten J, Cooper S, Horowitz S.
Dsilva L, et al. Among authors: flatten j.
Biochem Mol Biol Educ. 2019 Mar;47(2):133-139. doi: 10.1002/bmb.21208. Epub 2019 Jan 14.
Biochem Mol Biol Educ. 2019.
PMID: 30638297
Free PMC article.
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