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A general approach for haplotype phasing across the full spectrum of relatedness.
O'Connell J, Gurdasani D, Delaneau O, Pirastu N, Ulivi S, Cocca M, Traglia M, Huang J, Huffman JE, Rudan I, McQuillan R, Fraser RM, Campbell H, Polasek O, Asiki G, Ekoru K, Hayward C, Wright AF, Vitart V, Navarro P, Zagury JF, Wilson JF, Toniolo D, Gasparini P, Soranzo N, Sandhu MS, Marchini J. O'Connell J, et al. Among authors: delaneau o. PLoS Genet. 2014 Apr 17;10(4):e1004234. doi: 10.1371/journal.pgen.1004234. eCollection 2014 Apr. PLoS Genet. 2014. PMID: 24743097 Free PMC article.
Mapache: a flexible pipeline to map ancient DNA.
Neuenschwander S, Cruz Dávalos DI, Anchieri L, Sousa da Mota B, Bozzi D, Rubinacci S, Delaneau O, Rasmussen S, Malaspinas AS. Neuenschwander S, et al. Among authors: delaneau o. Bioinformatics. 2023 Feb 3;39(2):btad028. doi: 10.1093/bioinformatics/btad028. Bioinformatics. 2023. PMID: 36637197 Free PMC article.
ISHAPE: new rapid and accurate software for haplotyping.
Delaneau O, Coulonges C, Boelle PY, Nelson G, Spadoni JL, Zagury JF. Delaneau O, et al. BMC Bioinformatics. 2007 Jun 15;8:205. doi: 10.1186/1471-2105-8-205. BMC Bioinformatics. 2007. PMID: 17573965 Free PMC article.
Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).
Limou S, Le Clerc S, Coulonges C, Carpentier W, Dina C, Delaneau O, Labib T, Taing L, Sladek R, Deveau C, Ratsimandresy R, Montes M, Spadoni JL, Lelièvre JD, Lévy Y, Therwath A, Schächter F, Matsuda F, Gut I, Froguel P, Delfraissy JF, Hercberg S, Zagury JF; ANRS Genomic Group. Limou S, et al. Among authors: delaneau o. J Infect Dis. 2009 Feb 1;199(3):419-26. doi: 10.1086/596067. J Infect Dis. 2009. PMID: 19115949
Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).
Le Clerc S, Limou S, Coulonges C, Carpentier W, Dina C, Taing L, Delaneau O, Labib T, Sladek R; ANRS Genomic Group; Deveau C, Guillemain H, Ratsimandresy R, Montes M, Spadoni JL, Therwath A, Schächter F, Matsuda F, Gut I, Lelièvre JD, Lévy Y, Froguel P, Delfraissy JF, Hercberg S, Zagury JF. Le Clerc S, et al. Among authors: delaneau o. J Infect Dis. 2009 Oct 15;200(8):1194-201. doi: 10.1086/605892. J Infect Dis. 2009. PMID: 19754311
130 results