Costa F - Search Results

1

Backofen R, Amman F, Costa F, Findeiß S, Richter AS, Stadler PF. Backofen R, et al. Among authors: costa f. RNA Biol. 2014;11(5):470-83. doi: 10.4161/rna.28647. Epub 2014 Apr 2. RNA Biol. 2014. PMID: 24755880 Free PMC article. Review.

2

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.

Miladi M, Junge A, Costa F, Seemann SE, Havgaard JH, Gorodkin J, Backofen R. Miladi M, et al. Among authors: costa f. Bioinformatics. 2017 Jul 15;33(14):2089-2096. doi: 10.1093/bioinformatics/btx114. Bioinformatics. 2017. PMID: 28334186 Free PMC article.

3

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Raden M, Ali SM, Alkhnbashi OS, Busch A, Costa F, Davis JA, Eggenhofer F, Gelhausen R, Georg J, Heyne S, Hiller M, Kundu K, Kleinkauf R, Lott SC, Mohamed MM, Mattheis A, Miladi M, Richter AS, Will S, Wolff J, Wright PR, Backofen R. Raden M, et al. Among authors: costa f. Nucleic Acids Res. 2018 Jul 2;46(W1):W25-W29. doi: 10.1093/nar/gky329. Nucleic Acids Res. 2018. PMID: 29788132 Free PMC article.

4

GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering.

Miladi M, Sokhoyan E, Houwaart T, Heyne S, Costa F, Grüning B, Backofen R. Miladi M, et al. Among authors: costa f. Gigascience. 2019 Dec 1;8(12):giz150. doi: 10.1093/gigascience/giz150. Gigascience. 2019. PMID: 31808801 Free PMC article.

5

GraphClust: alignment-free structural clustering of local RNA secondary structures.

Heyne S, Costa F, Rose D, Backofen R. Heyne S, et al. Among authors: costa f. Bioinformatics. 2012 Jun 15;28(12):i224-32. doi: 10.1093/bioinformatics/bts224. Bioinformatics. 2012. PMID: 22689765 Free PMC article.

6

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.

Videm P, Rose D, Costa F, Backofen R. Videm P, et al. Among authors: costa f. Bioinformatics. 2014 Jun 15;30(12):i274-82. doi: 10.1093/bioinformatics/btu270. Bioinformatics. 2014. PMID: 24931994 Free PMC article.

7

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification.

de Araujo Oliveira JV, Costa F, Backofen R, Stadler PF, Machado Telles Walter ME, Hertel J. de Araujo Oliveira JV, et al. Among authors: costa f. BMC Bioinformatics. 2016 Dec 15;17(Suppl 18):464. doi: 10.1186/s12859-016-1345-6. BMC Bioinformatics. 2016. PMID: 28105919 Free PMC article.

8

A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains.

Kundu K, Costa F, Backofen R. Kundu K, et al. Among authors: costa f. Bioinformatics. 2013 Jul 1;29(13):i335-43. doi: 10.1093/bioinformatics/btt220. Bioinformatics. 2013. PMID: 23813002 Free PMC article.

9

MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions.

Kundu K, Mann M, Costa F, Backofen R. Kundu K, et al. Among authors: costa f. Bioinformatics. 2014 Sep 15;30(18):2668-9. doi: 10.1093/bioinformatics/btu350. Epub 2014 May 28. Bioinformatics. 2014. PMID: 24872426 Free PMC article.

10

Semi-supervised prediction of SH2-peptide interactions from imbalanced high-throughput data.

Kundu K, Costa F, Huber M, Reth M, Backofen R. Kundu K, et al. Among authors: costa f. PLoS One. 2013 May 17;8(5):e62732. doi: 10.1371/journal.pone.0062732. Print 2013. PLoS One. 2013. PMID: 23690949 Free PMC article.

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