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Bioinformatics of prokaryotic RNAs.
Backofen R, Amman F, Costa F, Findeiß S, Richter AS, Stadler PF. Backofen R, et al. Among authors: stadler pf. RNA Biol. 2014;11(5):470-83. doi: 10.4161/rna.28647. Epub 2014 Apr 2. RNA Biol. 2014. PMID: 24755880 Free PMC article. Review.
Evolution of microRNAs.
Tanzer A, Stadler PF. Tanzer A, et al. Among authors: stadler pf. Methods Mol Biol. 2006;342:335-50. doi: 10.1385/1-59745-123-1:335. Methods Mol Biol. 2006. PMID: 16957387 Review.
RNAs everywhere: genome-wide annotation of structured RNAs.
Athanasius F Bompfünewerer Consortium; Backofen R, Bernhart SH, Flamm C, Fried C, Fritzsch G, Hackermüller J, Hertel J, Hofacker IL, Missal K, Mosig A, Prohaska SJ, Rose D, Stadler PF, Tanzer A, Washietl S, Will S. Athanasius F Bompfünewerer Consortium, et al. Among authors: stadler pf. J Exp Zool B Mol Dev Evol. 2007 Jan 15;308(1):1-25. doi: 10.1002/jez.b.21130. J Exp Zool B Mol Dev Evol. 2007. PMID: 17171697 Review.
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering.
Will S, Reiche K, Hofacker IL, Stadler PF, Backofen R. Will S, et al. Among authors: stadler pf. PLoS Comput Biol. 2007 Apr 13;3(4):e65. doi: 10.1371/journal.pcbi.0030065. Epub 2007 Feb 22. PLoS Comput Biol. 2007. PMID: 17432929 Free PMC article.
Furthermore, we have applied it to a previously published set of 3,332 predicted structured elements in the Ciona intestinalis genome (Missal K, Rose D, Stadler PF (2005) Noncoding RNAs in Ciona intestinalis. Bioinformatics 21 (Supplement 2): i77-i78). ...
Furthermore, we have applied it to a previously published set of 3,332 predicted structured elements in the Ciona intestinalis genome (Missa …
Variations on RNA folding and alignment: lessons from Benasque.
Bompfünewerer AF, Backofen R, Bernhart SH, Hertel J, Hofacker IL, Stadler PF, Will S. Bompfünewerer AF, et al. Among authors: stadler pf. J Math Biol. 2008 Jan;56(1-2):129-44. doi: 10.1007/s00285-007-0107-5. Epub 2007 Jul 5. J Math Biol. 2008. PMID: 17611759
Computational RNomics of drosophilids.
Rose D, Hackermüller J, Washietl S, Reiche K, Hertel J, Findeiss S, Stadler PF, Prohaska SJ. Rose D, et al. Among authors: stadler pf. BMC Genomics. 2007 Nov 8;8:406. doi: 10.1186/1471-2164-8-406. BMC Genomics. 2007. PMID: 17996037 Free PMC article.
Folding kinetics of large RNAs.
Geis M, Flamm C, Wolfinger MT, Tanzer A, Hofacker IL, Middendorf M, Mandl C, Stadler PF, Thurner C. Geis M, et al. Among authors: stadler pf. J Mol Biol. 2008 May 23;379(1):160-73. doi: 10.1016/j.jmb.2008.02.064. Epub 2008 Mar 6. J Mol Biol. 2008. PMID: 18440024
594 results