Forrest AR - Search Results

1

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE).

Ohmiya H, Vitezic M, Frith MC, Itoh M, Carninci P, Forrest AR, Hayashizaki Y, Lassmann T; FANTOM Consortium. Ohmiya H, et al. Among authors: forrest ar. BMC Genomics. 2014 Apr 25;15:269. doi: 10.1186/1471-2164-15-269. BMC Genomics. 2014. PMID: 24779366 Free PMC article.

2

Unamplified cap analysis of gene expression on a single-molecule sequencer.

Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya N, Daub CO, Carninci P, Forrest AR, Hayashizaki Y. Kanamori-Katayama M, et al. Among authors: forrest ar. Genome Res. 2011 Jul;21(7):1150-9. doi: 10.1101/gr.115469.110. Epub 2011 May 19. Genome Res. 2011. PMID: 21596820 Free PMC article.

3

CAGE-defined promoter regions of the genes implicated in Rett Syndrome.

Vitezic M, Bertin N, Andersson R, Lipovich L, Kawaji H, Lassmann T, Sandelin A, Heutink P, Goldowitz D, Ha T, Zhang P, Patrizi A, Fagiolini M, Forrest AR, Carninci P, Saxena A; FANTOM Consortium. Vitezic M, et al. Among authors: forrest ar. BMC Genomics. 2014 Dec 24;15(1):1177. doi: 10.1186/1471-2164-15-1177. BMC Genomics. 2014. PMID: 25539566 Free PMC article.

4

Correction to: Relatively frequent switching of transcription start sites during cerebellar development.

Zhang P, Dimont E, Ha T, Swanson DJ, Itoh M, Kawaji H, Lassmann T, Daub CO, Arner E; FANTOM Consortium; Carninci P, Hayashizaki Y, Forrest ARR, Hide W, Goldowitz D. Zhang P, et al. BMC Genomics. 2018 Jan 11;19(1):39. doi: 10.1186/s12864-017-4291-4. BMC Genomics. 2018. PMID: 29325522 Free PMC article.

5

Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.

Ha TJ, Zhang PGY, Robert R, Yeung J, Swanson DJ, Mathelier A, Wasserman WW, Im S, Itoh M, Kawaji H, Lassmann T, Daub CO, Arner E; FANTOM Consortium; Carninci P, Hayashizaki Y, Forrest ARR, Goldowitz D. Ha TJ, et al. BMC Genomics. 2019 Sep 18;20(1):718. doi: 10.1186/s12864-019-6063-9. BMC Genomics. 2019. PMID: 31533632 Free PMC article.

6

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

Faulkner GJ, Forrest AR, Chalk AM, Schroder K, Hayashizaki Y, Carninci P, Hume DA, Grimmond SM. Faulkner GJ, et al. Among authors: forrest ar. Genomics. 2008 Mar;91(3):281-8. doi: 10.1016/j.ygeno.2007.11.003. Genomics. 2008. PMID: 18178374 Free article.

7

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.

Kawaji H, Severin J, Lizio M, Waterhouse A, Katayama S, Irvine KM, Hume DA, Forrest AR, Suzuki H, Carninci P, Hayashizaki Y, Daub CO. Kawaji H, et al. Among authors: forrest ar. Genome Biol. 2009;10(4):R40. doi: 10.1186/gb-2009-10-4-r40. Epub 2009 Apr 19. Genome Biol. 2009. PMID: 19374775 Free PMC article.

8

Annotating non-coding transcription using functional genomics strategies.

Forrest AR, Abdelhamid RF, Carninci P. Forrest AR, et al. Brief Funct Genomic Proteomic. 2009 Nov;8(6):437-43. doi: 10.1093/bfgp/elp041. Brief Funct Genomic Proteomic. 2009. PMID: 19833699 Free PMC article. Review.

9

Whole genome transcriptome analysis.

Forrest AR, Carninci P. Forrest AR, et al. RNA Biol. 2009 Apr-Jun;6(2):107-12. doi: 10.4161/rna.6.2.7931. RNA Biol. 2009. PMID: 19875928 Review.

10

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.

Vitezic M, Lassmann T, Forrest AR, Suzuki M, Tomaru Y, Kawai J, Carninci P, Suzuki H, Hayashizaki Y, Daub CO. Vitezic M, et al. Among authors: forrest ar. Nucleic Acids Res. 2010 Dec;38(22):8141-8. doi: 10.1093/nar/gkq729. Epub 2010 Aug 19. Nucleic Acids Res. 2010. PMID: 20724440 Free PMC article.

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