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Large-scale clustering of CAGE tag expression data.
Shimokawa K, Okamura-Oho Y, Kurita T, Frith MC, Kawai J, Carninci P, Hayashizaki Y. Shimokawa K, et al. Among authors: hayashizaki y. BMC Bioinformatics. 2007 May 21;8:161. doi: 10.1186/1471-2105-8-161. BMC Bioinformatics. 2007. PMID: 17517134 Free PMC article.
Unamplified cap analysis of gene expression on a single-molecule sequencer.
Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya N, Daub CO, Carninci P, Forrest AR, Hayashizaki Y. Kanamori-Katayama M, et al. Among authors: hayashizaki y. Genome Res. 2011 Jul;21(7):1150-9. doi: 10.1101/gr.115469.110. Epub 2011 May 19. Genome Res. 2011. PMID: 21596820 Free PMC article.
MOIRAI: a compact workflow system for CAGE analysis.
Hasegawa A, Daub C, Carninci P, Hayashizaki Y, Lassmann T. Hasegawa A, et al. Among authors: hayashizaki y. BMC Bioinformatics. 2014 May 16;15:144. doi: 10.1186/1471-2105-15-144. BMC Bioinformatics. 2014. PMID: 24884663 Free PMC article.
Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.
Ha TJ, Zhang PGY, Robert R, Yeung J, Swanson DJ, Mathelier A, Wasserman WW, Im S, Itoh M, Kawaji H, Lassmann T, Daub CO, Arner E; FANTOM Consortium; Carninci P, Hayashizaki Y, Forrest ARR, Goldowitz D. Ha TJ, et al. Among authors: hayashizaki y. BMC Genomics. 2019 Sep 18;20(1):718. doi: 10.1186/s12864-019-6063-9. BMC Genomics. 2019. PMID: 31533632 Free PMC article.
An atlas of active enhancers across human cell types and tissues.
Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C, Suzuki T, Ntini E, Arner E, Valen E, Li K, Schwarzfischer L, Glatz D, Raithel J, Lilje B, Rapin N, Bagger FO, Jørgensen M, Andersen PR, Bertin N, Rackham O, Burroughs AM, Baillie JK, Ishizu Y, Shimizu Y, Furuhata E, Maeda S, Negishi Y, Mungall CJ, Meehan TF, Lassmann T, Itoh M, Kawaji H, Kondo N, Kawai J, Lennartsson A, Daub CO, Heutink P, Hume DA, Jensen TH, Suzuki H, Hayashizaki Y, Müller F, Forrest ARR, Carninci P, Rehli M, Sandelin A. Andersson R, et al. Among authors: hayashizaki y. Nature. 2014 Mar 27;507(7493):455-461. doi: 10.1038/nature12787. Nature. 2014. PMID: 24670763 Free PMC article.
642 results