Salama R - Search Results

1

Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data.

Carroll TS, Liang Z, Salama R, Stark R, de Santiago I. Carroll TS, et al. Among authors: salama r. Front Genet. 2014 Apr 10;5:75. doi: 10.3389/fgene.2014.00075. eCollection 2014. Front Genet. 2014. PMID: 24782889 Free PMC article.

2

Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation.

Chandra T, Kirschner K, Thuret JY, Pope BD, Ryba T, Newman S, Ahmed K, Samarajiwa SA, Salama R, Carroll T, Stark R, Janky R, Narita M, Xue L, Chicas A, Nũnez S, Janknecht R, Hayashi-Takanaka Y, Wilson MD, Marshall A, Odom DT, Babu MM, Bazett-Jones DP, Tavaré S, Edwards PA, Lowe SW, Kimura H, Gilbert DM, Narita M. Chandra T, et al. Among authors: salama r. Mol Cell. 2012 Jul 27;47(2):203-14. doi: 10.1016/j.molcel.2012.06.010. Epub 2012 Jul 12. Mol Cell. 2012. PMID: 22795131 Free PMC article.

3

Redistribution of the Lamin B1 genomic binding profile affects rearrangement of heterochromatic domains and SAHF formation during senescence.

Sadaie M, Salama R, Carroll T, Tomimatsu K, Chandra T, Young AR, Narita M, Pérez-Mancera PA, Bennett DC, Chong H, Kimura H, Narita M. Sadaie M, et al. Among authors: salama r. Genes Dev. 2013 Aug 15;27(16):1800-8. doi: 10.1101/gad.217281.113. Genes Dev. 2013. PMID: 23964094 Free PMC article.

4

Cellular senescence and its effector programs.

Salama R, Sadaie M, Hoare M, Narita M. Salama R, et al. Genes Dev. 2014 Jan 15;28(2):99-114. doi: 10.1101/gad.235184.113. Genes Dev. 2014. PMID: 24449267 Free PMC article. Review.

5

NOTCH1 mediates a switch between two distinct secretomes during senescence.

Hoare M, Ito Y, Kang TW, Weekes MP, Matheson NJ, Patten DA, Shetty S, Parry AJ, Menon S, Salama R, Antrobus R, Tomimatsu K, Howat W, Lehner PJ, Zender L, Narita M. Hoare M, et al. Among authors: salama r. Nat Cell Biol. 2016 Sep;18(9):979-92. doi: 10.1038/ncb3397. Epub 2016 Aug 15. Nat Cell Biol. 2016. PMID: 27525720 Free PMC article.

6

Co-incidence of RCC-susceptibility polymorphisms with HIF cis-acting sequences supports a pathway tuning model of cancer.

Schmid V, Lafleur VN, Lombardi O, Li R, Salama R, Colli L, Choudhry H, Chanock S, Ratcliffe PJ, Mole DR. Schmid V, et al. Among authors: salama r. Sci Rep. 2019 Dec 10;9(1):18768. doi: 10.1038/s41598-019-55098-7. Sci Rep. 2019. PMID: 31822727 Free PMC article.

7

A non-independent energy-based multiple sequence alignment improves prediction of transcription factor binding sites.

Salama RA, Stekel DJ. Salama RA, et al. Bioinformatics. 2013 Nov 1;29(21):2699-704. doi: 10.1093/bioinformatics/btt463. Epub 2013 Aug 28. Bioinformatics. 2013. PMID: 23990411

8

Multiple renal cancer susceptibility polymorphisms modulate the HIF pathway.

Grampp S, Schmid V, Salama R, Lauer V, Kranz F, Platt JL, Smythies J, Choudhry H, Goppelt-Struebe M, Ratcliffe PJ, Mole DR, Schödel J. Grampp S, et al. Among authors: salama r. PLoS Genet. 2017 Jul 17;13(7):e1006872. doi: 10.1371/journal.pgen.1006872. eCollection 2017 Jul. PLoS Genet. 2017. PMID: 28715484 Free PMC article.

9

Heterogeneous Effects of Direct Hypoxia Pathway Activation in Kidney Cancer.

Salama R, Masson N, Simpson P, Sciesielski LK, Sun M, Tian YM, Ratcliffe PJ, Mole DR. Salama R, et al. PLoS One. 2015 Aug 11;10(8):e0134645. doi: 10.1371/journal.pone.0134645. eCollection 2015. PLoS One. 2015. PMID: 26262842 Free PMC article.

10

Inclusion of neighboring base interdependencies substantially improves genome-wide prokaryotic transcription factor binding site prediction.

Salama RA, Stekel DJ. Salama RA, et al. Nucleic Acids Res. 2010 Jul;38(12):e135. doi: 10.1093/nar/gkq274. Epub 2010 May 3. Nucleic Acids Res. 2010. PMID: 20439311 Free PMC article.

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